Pseudodesulfovibrio sediminis: PSDVSF_30470
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Entry
PSDVSF_30470 CDS
T08380
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSDVSF_30470 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psef03019
]
PSDVSF_30470 (rhlE-2)
Enzymes [BR:
psef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSDVSF_30470 (rhlE-2)
Messenger RNA biogenesis [BR:
psef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSDVSF_30470 (rhlE-2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Shikimate_DH
Motif
Other DBs
NCBI-ProteinID:
BCS89805
UniProt:
A0ABN6EWH2
LinkDB
All DBs
Position
complement(3237986..3239131)
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AA seq
381 aa
AA seq
DB search
MGLAQTGTGKTAAFALPTLQRLLDKRMPAKGAPTILVLAPTRELALQIHESYVNLGKQTG
VRSAAVIGGVGMNPQIKAFGFSRIIVACPGRLVRLMKMGKVSLNNIDTLVLDEADRMLDM
GFMPDIKRILAKLPAKRQNLLFSATMPDDIRHLAEDILNRPKTVQVANTVAVKAVDHAQY
KAPAHLKVSLLSKILAETNHESVLIFTRTKHKAKNLARKLCNEGRQCTFLQGNMSQGQRQ
RALDGFKSGQFDIMVATDIAARGIDCDRISHVINFDMPDTVETYTHRVGRTGRAGRSGSA
LSLVTPDERSQIRSIERIMNITMEQCSIEGFDHNAASPKPDPRNTRANKPKGRFSNSRKR
GASQGRNTNQGRSNRGRRAAA
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgggtctggcccaaaccggcaccggcaagaccgctgcctttgccctgcccaccctgcaa
cgcctgctggacaaacgcatgcctgccaagggcgcacccaccattctggtgctggctccc
acccgcgagctggccctgcagatccacgaaagctatgtcaatctcggcaagcagaccggt
gtccgcagcgctgccgtcatcggcggcgtgggaatgaacccccagatcaaggcctttggc
ttttcccgcattatcgtggcctgccccggtcgtctcgtccgtctcatgaagatgggcaag
gtttccctgaacaacatcgacaccctggttcttgacgaagcagaccgcatgctcgacatg
ggcttcatgcccgacatcaagcgcatcctcgccaaactgcctgcaaaacggcagaacctg
ctcttttccgcgaccatgcccgacgatatccgccacctcgccgaggacatcctcaaccgt
cccaagacggtccaggtcgccaataccgtagcggtcaaagctgtggatcacgcgcaatac
aaagcccccgcgcatctcaaggtctccctgctcagcaaaattctggccgagaccaaccat
gagagcgtgctgattttcacccgtaccaagcacaaggccaagaacctggcccgcaagctc
tgcaacgaaggacgtcaatgcacattccttcagggcaacatgagtcagggacagcgccag
agagcgctcgacggattcaagtccggccagttcgacatcatggtggctaccgatatcgct
gctcgcggcattgactgcgaccgcatttcccatgtcatcaactttgacatgccggacaca
gtggaaacatacacccaccgcgtcggccgtacaggccgggccggacgttccggcagcgca
ctcagcctcgtcaccccggatgagcgttcccagatccgttccatcgaacggatcatgaac
atcaccatggagcaatgctccattgaaggctttgaccacaacgctgccagccccaagccg
gatccgcgcaacactcgggccaacaagcccaaaggccgcttttccaattcccggaagcgg
ggagcgagccagggacgcaacaccaatcagggacgctccaaccgaggacgcagggccgca
gcctag
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