Pseudodesulfovibrio sediminis: PSDVSF_32640
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Entry
PSDVSF_32640 CDS
T08380
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSDVSF_32640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psef03019
]
PSDVSF_32640
03009 Ribosome biogenesis [BR:
psef03009
]
PSDVSF_32640
Enzymes [BR:
psef01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSDVSF_32640
Messenger RNA biogenesis [BR:
psef03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSDVSF_32640
Ribosome biogenesis [BR:
psef03009
]
Prokaryotic type
rRNA helicases
PSDVSF_32640
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
CMS1
ERCC3_RAD25_C
HNH_2
Motif
Other DBs
NCBI-ProteinID:
BCS90022
UniProt:
A0ABN6EWW9
LinkDB
All DBs
Position
complement(3490404..3492074)
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AA seq
556 aa
AA seq
DB search
MTSFKDLGLSDEMLTALESKGFTAPTPIQALTIPMLLTGAVDIVGQAQTGTGKTAAFGLP
VIEAADEQARHIQSLILTPTRELAIQVAEEINSLKGRKRIRVLPVYGGQAIHMQFKALKR
GVDIVVGTPGRIMDHLKRGTMHIDNLDFFILDEADEMCNMGFVDDVREILASANDDRRTL
LFSATMQREVMRIAKEFMGDYEVVTVKPEKSDAPLTRQIFHEMADSDRFEALCRVIDAQS
DFYGLVFTRTRADADLVASRLTQRGYPSEPIHGDLNQNQREKILNSFRKRKATILVATDV
AARGIDVPDLTHVVNFAIPQDPQTFVHRTGRTGRAGKEGVAITLIAPNEFRRLMYISKSS
GIEIKKEKLPRIQDVIYSKKTRVVAELEAIMETEGHNSYLDMARELLAERDPAEVIAALL
KNSFGNELIESSYREIDAVGPGAPGGAPRGRVDLVCALGRSHGMNPKAFVEFVSEAAHIK
PWAIQHVRIKGNKTTFTVPGHEADKVMNKVNSRDGSPLISKGEFKKKPPYGRKYHKSGGP
MQGKRPYKKKYPPKKD
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtttcaaggatctgggtctgtcagacgaaatgctgacggctcttgaatccaag
gggttcacagcccccactcccattcaggcactgaccatccccatgctcctgaccggagcc
gtggatatcgtgggtcaggcacagacaggcacgggtaaaaccgcggccttcggcctgcct
gtcatcgaggctgccgacgaacaggcacgccatatccagtctctcatcctcacgcccaca
cgcgagctcgccatccaggtggccgaagagatcaattcgctcaaaggcagaaaacgcatc
cgtgtcctgcccgtctacggcggccaggccattcacatgcagttcaaggcgctcaaacgc
ggcgtggacatcgtggtcggcacccccggccgcatcatggaccatctcaaacggggcacc
atgcacattgacaacctcgacttcttcattctcgatgaggcggacgaaatgtgcaacatg
ggctttgtggacgatgtgcgcgagatcctcgcctcggccaacgatgaccgacgtaccctg
ctcttctctgcaaccatgcagcgtgaagtcatgcgcatcgccaaggaattcatgggcgac
tatgaagtcgtgaccgtgaagccggaaaaatccgatgccccgctcacccgacagatcttc
cacgaaatggccgactccgatcgcttcgaagcgctctgccgcgtcattgatgcccaatcc
gacttttacgggctggtcttcacacgaacccgtgcagacgccgacctcgtggcctccaga
ctgacccagcgcggctatccgtccgaacccattcacggcgacctcaatcagaatcagcgt
gaaaagatcctgaacagcttccgcaaacgcaaggcaaccattctggtggccacggatgtg
gcggcacgaggcattgatgtgccggacctgacccatgtggtcaacttcgccatcccgcag
gacccgcagacctttgtgcaccgcaccggccgcaccggtcgcgcgggcaaggaaggcgtg
gccatcacgctcatcgcgcccaacgaattccgccgtctcatgtatatctccaagagctcc
ggcatcgaaatcaagaaggaaaaactgccgcgcatccaggacgtcatctattccaagaaa
acccgcgtggtagccgagctggaagccatcatggaaaccgaggggcacaactcctatctg
gatatggcccgggaactcctggccgaaagagatccggctgaagtgatagccgctctgctc
aagaactcctttggcaacgaattgatcgagtccagctatcgagagatcgatgccgtcggc
cccggcgctcccggcggagcacctcgtggccgcgtggacctcgtctgcgcccttggtcgc
tctcatggcatgaaccccaaggcttttgtggagttcgtttccgaagctgcccacatcaaa
ccatgggccatccagcacgttcgtataaaaggcaacaagaccacgttcaccgtgcccggc
catgaggctgacaaggtaatgaacaaggtcaacagccgggacggcagccccctcatttcc
aaaggggaattcaagaagaaaccgccctatggtcgaaaataccacaagagcggcggcccc
atgcagggcaaacgcccctacaagaaaaaatatccgcccaaaaaggactga
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