Pseudodesulfovibrio sediminis: PSDVSF_34390
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Entry
PSDVSF_34390 CDS
T08380
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03410
Base excision repair
psef03430
Mismatch repair
psef03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PSDVSF_34390 (recJ)
03430 Mismatch repair
PSDVSF_34390 (recJ)
03440 Homologous recombination
PSDVSF_34390 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_34390 (recJ)
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PSDVSF_34390 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PSDVSF_34390 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PSDVSF_34390 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BCS90197
UniProt:
A0ABN6EXQ3
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All DBs
Position
3663470..3665104
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AA seq
544 aa
AA seq
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MSELIVEILWNRGLTDVEEMDKFLSPLLRHMANPVEIPGLAEAVEVIAKGVAEGRTLGVW
GDYDVDGITATAVVKEFFGSRGIDIPHHLPNRMEEGYGMNTEGVEQLREQGVDMLLTVDC
GISDLEPVARAKELGMIVVVSDHHLPGDELPEADAICNPRLIEGGSCDDLAGVGVAFMLM
VALNKLLPGDPVDVRPLLDLVALGTIADIVKLTGQNRILVKNGLLIIKEAKRPGMAALKV
VSDYERQAELGAGQIGYNLAPRINAAGRMGDPTKALNLLLADSFDEAMPIAEELNSINME
RRRQEQEIAEQAFAQAESMKHMAGFVLHGEDWHPGIIGIVASRVVEKYYRPTLILCTSET
GEGLLKGSGRSVSEYNLYEGLQAVSGVLEGFGGHKQAAGLSLKPENLTALREQFNNHVVD
TLGPEPLTPTLKLDHELGFSNINHTLLKELELLQPFGMGNPEPLFATKKVTVAEHRTFGR
EREHVKVVLKDEETGTRLPGKAWRMASTLTHQVRDRKMRFAFSPKIDRFRGIPTIDLLIK
DWIF
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
gtgtctgaactcatcgtggaaatactctggaaccggggattgaccgatgttgaggagatg
gacaagttcctcagcccgctcctgcggcatatggccaaccctgtggaaatacccggcctt
gcagaggctgttgaggtcatcgcgaaaggtgtggccgaagggcgcacgctgggcgtgtgg
ggtgactatgatgtggacggcatcacggccacggctgtggtcaaggaatttttcggcagt
cggggtatcgatatcccgcatcacctgcccaaccgcatggaggaagggtatggcatgaac
acggagggcgtggagcaactcagagagcaaggggtcgatatgctgctcaccgtggactgc
ggcatctccgatctggagcctgtggcccgcgcaaaggagttgggcatgatcgtggtggtt
tcggatcatcacctgcctggtgacgagctgcccgaggccgatgccatttgcaatccgcga
ctcattgaaggcggctcctgtgatgatctggccggagtcggggtggcgttcatgctcatg
gtcgcgctcaataaattattgcccggtgatccggtggacgtacgaccgctccttgatctg
gtggcactgggcactatcgccgatatcgtcaaactcaccggacagaatcgtattctggtc
aagaacggcctgttgatcatcaaggaagccaaacgcccgggcatggccgcgctcaaggtg
gtcagcgactacgagcgacaggcggagcttggcgccgggcagatcgggtacaacctcgcg
ccccgtatcaatgcggccggccgtatgggtgacccgaccaaggccctcaatttgctgctg
gccgacagctttgacgaggccatgcccattgccgaagagttgaattccatcaatatggag
cgtcgtcggcaggagcaggagatcgccgagcaggcatttgcccaggccgagtccatgaaa
cacatggccggatttgtgcttcacggagaggactggcatcccggtatcatcggtattgtc
gcttctcgtgtggtggagaaatactatcggcccacgcttatcctgtgcacctcggagacg
ggcgaagggctgctgaaaggttctgggcgcagtgtgtcggagtacaacctgtacgagggc
ttgcaggctgtcagcggtgtgctcgaaggattcggcggacataagcaggcggcaggcttg
tcgctcaagccggagaatctcacggccctgcgtgaacagttcaataaccatgtggttgat
acgcttggacctgaaccgcttacaccgaccctcaagcttgatcacgagctgggtttctcc
aacatcaatcacacgttgctcaaagagctggaactgctgcaaccctttggcatggggaac
ccggagccgctctttgccaccaaaaaagtgaccgtcgccgagcaccgcacgtttggccgc
gaacgcgaacacgtgaaagtggtcctcaaggacgaagagaccggtaccagattgccaggc
aaggcatggcgtatggccagcaccctgacgcatcaggtgcgcgacagaaaaatgcgcttc
gccttttcgccaaagatcgatcgttttcgcggcatacccaccatcgatcttctgatcaag
gattggattttttaa
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