Pseudodesulfovibrio sediminis: PSDVSF_34640
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Entry
PSDVSF_34640 CDS
T08380
Symbol
ddl_2
Name
(GenBank) D-alanine--D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef00470
D-Amino acid metabolism
psef00550
Peptidoglycan biosynthesis
psef01100
Metabolic pathways
psef01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PSDVSF_34640 (ddl_2)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
PSDVSF_34640 (ddl_2)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
PSDVSF_34640 (ddl_2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
psef01011
]
PSDVSF_34640 (ddl_2)
Enzymes [BR:
psef01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
PSDVSF_34640 (ddl_2)
Peptidoglycan biosynthesis and degradation proteins [BR:
psef01011
]
Precursor biosynthesis
Amino acid ligase
PSDVSF_34640 (ddl_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
Dala_Dala_lig_N
ATP-grasp_3
ATP-grasp
CPSase_L_D2
ATP-grasp_4
GARS_A
ATPgrasp_ST
TTL
ATPgrasp_YheCD
Motif
Other DBs
NCBI-ProteinID:
BCS90222
UniProt:
A0ABM7PAT3
LinkDB
All DBs
Position
complement(3687984..3688901)
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AA seq
305 aa
AA seq
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MHVILIAGGWSDEREVSLSGAKKIHSALEELGHTVTFFDPADDFKSLLTIAKEADFAFIN
LHGTPGEDGLIQAILDKADCPYQGAGPAASYLALNKAASKEVFEDRGIKTPDWQLVTPVQ
GVATPLELELPVFVKPNKGGSSLGMSLVKRAEDFPAALEKVFAMCQSALVESFIPGVELT
CGILGDDPLPLIMIKPRSDSEFFDYANKYAEDGAEEICPAPVDEELSDSIQAQMVVAHNA
LGLTGYSRGDFMVTKDGEAYLLEVNTLPGMTPTSLLPQAAGHVGFSFTELIGELIRLGLE
KGTHK
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atgcatgtgattttgatagcgggcggatggtctgacgaacgggaagtatcgctttccgga
gccaaaaaaatccattcagccctggaagagcttggacatactgtcacttttttcgatccg
gccgatgatttcaaaagtcttttgaccatagccaaagaagcggatttcgctttcatcaac
ctccacggcaccccgggggaagacggcctcatccaggccatactcgacaaggcggattgt
ccctatcagggggctggccccgccgcatcctatctggccctgaacaaagcggccagcaag
gaggtcttcgaggatcggggaataaagaccccggactggcagttggtcacgcccgttcaa
ggcgttgctacgccgcttgagttggagctgccggtattcgtcaagcccaacaagggcggt
tcgtcgctgggcatgtcactggtcaagagagcagaagacttccccgccgccttggaaaag
gtgttcgccatgtgccagtccgcgctcgtcgaatccttcatccccggcgtggaactgacc
tgcggcatcctcggtgacgacccgttgccgcttatcatgatcaagccccgatcggactcc
gagttctttgactatgcgaacaagtacgcagaggacggcgcagaagagatctgccctgcc
ccggttgacgaggaactgtccgattccattcaggcgcagatggtcgttgcccacaacgcg
ctgggtctcaccggctacagccgaggcgacttcatggtcaccaaggatggcgaagcgtat
ctgctggaagtcaacaccctcccgggcatgacgccgaccagccttctgcctcaggcagcc
gggcatgttggattttccttcaccgaactcattggagaactcatccgcctcggccttgaa
aaaggaacacataaatga
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