Pseudodesulfovibrio sediminis: PSDVSF_35120
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Entry
PSDVSF_35120 CDS
T08380
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
psef
Pseudodesulfovibrio sediminis
Pathway
psef03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psef00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PSDVSF_35120 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psef03021
]
PSDVSF_35120 (rpoA)
03400 DNA repair and recombination proteins [BR:
psef03400
]
PSDVSF_35120 (rpoA)
Enzymes [BR:
psef01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PSDVSF_35120 (rpoA)
Transcription machinery [BR:
psef03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PSDVSF_35120 (rpoA)
DNA repair and recombination proteins [BR:
psef03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PSDVSF_35120 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
BCS90270
LinkDB
All DBs
Position
3726158..3727198
Genome browser
AA seq
346 aa
AA seq
DB search
MLIENGDKLINTRNWSELVKPEKLVRDPKSSEMYGKFICEPLERGFATTIGNAMRRVLLS
SMQGCAIVSATIEGVQHEFTTVPGVLEDMTEVVLNLKQVRMAMTTDEPQRLVLEANKKGQ
VTAGMIQENQNVTVLNKDQLIATLTEPRSMKMELEVRMGKGYVPADMHEGLTDEIGSMVL
DASYSPVKKVAYSVEQARVGQMTNYDKLILEVWTDGSVSPEDACAYSAKILKDQLSVFIN
FDELSSETAEEKEDAIDLNPNLFKSIDELELSVRATNCLKAANIQLVGELVQRTEQAMLK
TKNFGRKSLDEIRRVLDAMSLKFGMTVEDFDKKYQEWLKRKEKNEA
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgcttattgagaacggcgacaaactcatcaacacccgaaattggagcgaactggtcaag
cccgagaaactcgtgcgcgatcccaagtcctccgaaatgtacggtaaattcatctgcgaa
cctttggaacgcggctttgccactaccattggcaatgccatgcgccgggttcttctttcc
tccatgcaggggtgtgccatcgtgtccgccaccattgagggagtgcagcatgagtttacc
accgtaccgggcgtgcttgaggacatgaccgaggtcgtgttgaacctgaagcaggttcgc
atggcaatgaccacggacgagcctcagcgcttggtccttgaagccaacaagaaaggccag
gtcaccgctggcatgatccaggaaaatcagaacgtcaccgttctgaacaaggatcagctg
attgccacactgactgaacctcgctccatgaagatggagttggaagttcgcatgggcaag
ggctatgttcctgccgacatgcacgaaggactgaccgacgaaatcggctccatggtcctc
gacgccagctactcccccgttaagaaagtcgcatactccgtcgaacaggcgcgtgtggga
cagatgacaaactacgacaagctcatcctcgaagtgtggacagacggttccgtctctccc
gaggatgcctgtgcatacagcgccaagatcctgaaagatcagctttcggtgttcatcaat
ttcgatgagctttcttccgagaccgcagaggaaaaggaagatgccattgatttgaacccc
aacctcttcaagtccattgatgaactcgaactttccgttcgtgccaccaactgcttgaag
gccgccaacatccagttggttggtgagctggttcagcgcaccgaacaggccatgctcaag
accaagaactttggtcgcaagtcccttgacgaaattcgtcgggtcttggatgccatgtcc
ctcaagttcggtatgaccgttgaggattttgacaagaaataccaggaatggttgaagagg
aaagagaaaaatgaggcatag
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