Paraflavitalea soli: D3H65_18490
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Entry
D3H65_18490 CDS
T05640
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pseg
Paraflavitalea soli
Pathway
pseg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pseg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3H65_18490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseg03019
]
D3H65_18490
Enzymes [BR:
pseg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D3H65_18490
Messenger RNA biogenesis [BR:
pseg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D3H65_18490
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_22
CMS1
HEM4
Rb_C
P-loop_SecA
DsrH
Motif
Other DBs
NCBI-ProteinID:
AXY75853
UniProt:
A0A3B7MR74
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All DBs
Position
4936801..4938057
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AA seq
418 aa
AA seq
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MTFDQLNLQEPLLKALKDTGYTNPTPIQEKSIPIVLQQKDLLGCAQTGTGKTAAFAIPVL
QLLHSQQPAQRGPRAVRALVLTPTRELAIQIEESFRTYGKYTGLNQMVIFGGVSQGSQVN
ALRNGVDILIATPGRLLDLLNQGFVNLQHLQLFVLDEADRMLDMGFIHDVKRIIARIPVK
RQTLFFSATMPPEIAGLANTILKDPIKVEVTPVSSTAEKIAQEVYFTDKDSKRSLLIHVL
ENSTIERALVFARTKYGSDKIAKALTRAGIKADAIHGDKSQNARQHALNNFKNGKIRILV
ATDIAARGIDVDNLTHVINYELPNVPETYVHRIGRTGRAGASGIAISFCDAEERAYLKDI
QKLIKQSIPVVEEHPFPAAKTFIAPQPAIQKKSAGGGGNRNGNNGFKKRFNSNHSFNR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
ttgacatttgatcaactgaatcttcaggagcctttattaaaggcgctgaaggacacgggg
tatactaacccaactcccatccaggagaagtctatccctatcgtattacaacaaaaagac
ctgttgggctgcgcccagacaggcaccggcaaaacagccgctttcgcaatccctgtatta
caattattgcatagccagcaacctgctcaaagaggcccccgtgccgtaagagcactggta
ctcacgccaacgcgtgaactggctatccagatagaagaaagtttcaggacttatggtaaa
tataccggccttaaccaaatggttatttttggtggtgtatcacagggaagtcaggtcaac
gccctcagaaatggggtagatatcctgattgccacaccaggccgcctgcttgacctgctc
aaccagggattcgtaaacctgcagcacttgcaattattcgtattggatgaagccgaccgt
atgctggacatgggtttcattcatgacgtaaagcggatcattgcccgtattcctgttaaa
aggcaaaccttgttcttctcagctaccatgccccctgaaattgcgggcctggccaatacg
atcctgaaagatcccattaaagtagaagttacccctgtatcctctactgcagaaaagatc
gcccaggaagtatatttcactgataaggacagcaagcgctctctgctgatccatgtgctg
gagaattccaccatcgaacgcgccctcgtttttgcccgtaccaaatacggctccgacaag
atcgccaaagcattgacgcgtgcaggtattaaagccgatgctattcacggtgataaatca
cagaatgcacggcaacatgcactcaacaatttcaagaatggcaagatacgcatcctggta
gctacggatatcgccgcaaggggtattgatgtagacaacctcacacacgtgatcaactat
gaactgcccaatgtaccggagacctatgttcaccgcattggccgtactggtcgtgcaggc
gccagtggtatcgccatctccttttgtgatgcagaagaaagggcttacctgaaagacatt
cagaagctcattaagcaatctatcccggtagtggaagaacatcctttccctgctgccaaa
acgtttatcgctccccagcccgctattcaaaagaagtcagccggcggcggtggcaacagg
aacggtaataatggtttcaagaagcgattcaacagcaaccattctttcaaccgttaa
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