Paraflavitalea soli: D3H65_24275
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Entry
D3H65_24275 CDS
T05640
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pseg
Paraflavitalea soli
Brite
KEGG Orthology (KO) [BR:
pseg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pseg03009
]
D3H65_24275 (rlmD)
Enzymes [BR:
pseg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
D3H65_24275 (rlmD)
Ribosome biogenesis [BR:
pseg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
D3H65_24275 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
TRAM
TRM5-TYW2_MTfase
Methyltransf_25
Cons_hypoth95
Methyltransf_12
Methyltransf_15
PrmA
UPF0020
N6_N4_Mtase
FtsJ
Methyltransf_11
N6_Mtase
HTH_DeoR
Methyltransf_37
AviRa
PabTrmU54_TRAM_dom
Motif
Other DBs
NCBI-ProteinID:
AXY78766
UniProt:
A0A3B7N085
LinkDB
All DBs
Position
complement(6341181..6342620)
Genome browser
AA seq
479 aa
AA seq
DB search
MRKKNVVLQKLVVQDYAAEGKALAKIDGKVVFISGAVPGDVVDVRLSKNKKEWAEGKAVH
FYAFSKDRVSPFCEHFGVCGGCKWQMLPYAKQLEYKQHEVEQNLRRIGKVELPPIAAIAG
CESTERYRNKLEFTFSNRRYLLPDEIANATAIDQESALGFHVPRLFDKVIDINTCHLMAE
PTNAIKNTIRRFAMEQGYSFYDIREHQGWLRTLIIRVCTTGEVMVNVCFGYHDQEALTRL
FDHLLATVPGITTLLYTINPKKNDTIYDLQPRAYYGKGYITEKLEGLRFKIGPKSFFQTN
TRQGERLYEITRDFAELTGKETVYDLYCGTGSIGLFVSQQAAKIIGVEVIAEAIEDAKEN
AALNNIEHAQFFAGDVIDICNDAFFAHHGKPDVIITDPPRAGMHEKLVQKILDMEAPLVV
YVSCNPATQARDLNKLDEKYVVTRVQPVDMFPHTHHIENVVQLKLRNQDITFVTSKTAL
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaaaagaatgtggtactgcaaaaattggtggtacaggattatgcggctgagggt
aaagcgctggctaaaatagatggaaaggtggtttttatttcaggggcggtaccgggtgat
gtggtggatgtacgcttatccaagaacaaaaaggaatgggcggaaggaaaagctgttcat
ttctatgcgttttccaaagacagggtaagtcctttttgcgaacattttggtgtttgcggg
ggttgtaagtggcagatgctgccctacgccaaacagctggagtataaacaacatgaggta
gagcaaaaccttcggcgcattggcaaggtagaattaccacccatcgcggctatagcgggc
tgtgaaagcactgagcgctataggaataagctggaattcaccttcagcaaccgccgttac
ctgttgccggatgaaatcgctaatgcaacagcgatcgaccaggagagcgcgctggggttc
catgtgccgcgtctgtttgataaggtgattgatatcaatacctgccacctgatggcggag
cctaccaatgcgatcaagaatacgatccgccgctttgcgatggagcagggatatagtttt
tacgatatccgggagcaccagggctggctgcgcacactgatcatcagggtttgtaccacg
ggagaagtgatggtgaacgtgtgtttcgggtaccatgaccaggaggcgcttaccaggctg
tttgaccatttgctggcaacagtaccgggaatcaccacgctgctgtatacgatcaatcct
aaaaagaatgatactatttatgacctgcaaccgcgggcatattatggaaaaggatatatt
acagaaaagctcgaagggctgcgcttcaagataggtcctaagtcctttttccagacgaat
acacggcagggggaaagattatacgagataacacgtgattttgctgagttgacggggaag
gagacggtttatgatctttattgtggtacaggcagtatcgggttgtttgtgagccaacag
gcggcaaagatcataggagtagaagtgattgccgaggcgattgaggatgccaaagaaaat
gcggccctcaataatattgagcacgcacaatttttcgccggagatgttatagatatttgt
aacgatgctttctttgcccatcatggtaagccggatgtcatcatcacggatcctccaagg
gcgggtatgcatgagaagctggtgcaaaagatattggatatggaagcgccgctggtggtg
tatgtgagttgtaatccggccacgcaggccagggacctgaataagctggatgagaaatat
gtggtaaccagggtacagccggtggatatgttcccccacacgcatcatatcgaaaacgtg
gtgcaactaaagctcagaaaccaagacattacatttgtaacatctaaaacagcattatag
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