Pseudonocardia sp. HH130629-09: XF36_04630
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Entry
XF36_04630 CDS
T04082
Name
(GenBank) oligoribonuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
pseh
Pseudonocardia sp. HH130629-09
Pathway
pseh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pseh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
XF36_04630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pseh03019
]
XF36_04630
03009 Ribosome biogenesis [BR:
pseh03009
]
XF36_04630
Messenger RNA biogenesis [BR:
pseh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
XF36_04630
Ribosome biogenesis [BR:
pseh03009
]
Eukaryotic type
Pre-60S particles
RNases
XF36_04630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
ALE82516
LinkDB
All DBs
Position
complement(972533..973165)
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AA seq
210 aa
AA seq
DB search
MTDRLVWIDCEMTGLDLGSDALIEIAALVTDGDLNILGEGVDVVIACDDAKLDAMPDVVR
DMHARSGLTAEVRRATVTVEQAEKMVLDYVRTHVPDARSAPLAGNSIATDRGFIARDMTE
LDSYLHYRMIDVSSVKELARRWFPRVFYAKPEKGLAHRALADIRESIRELAYYRQALFVA
PPGPTTEQAQAAAAAVARVAAPPQTGTTPG
NT seq
633 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcggctggtgtggatcgactgcgagatgaccgggctggatctgggctccgac
gccctgatcgagatcgcggcgctggtcaccgacggcgacctcaacatcctcggcgagggc
gtcgacgtggtgatcgcctgtgacgacgcgaagctcgacgcgatgcccgacgtcgtccga
gacatgcacgcccggtccgggctgaccgccgaggtccggcgcgcgacggtcacggtcgag
caggccgagaagatggtgctcgactacgtccgcacccacgtcccggacgcccgctccgcg
ccgctggccggcaactcgatcgccaccgaccgcgggttcatcgcccgggacatgaccgag
ctggactcatacctgcactaccggatgatcgacgtcagctcggtgaaggagctggcgcgg
cgctggttcccacgggtgttctacgcgaagccggagaagggcctcgcgcaccgcgcgctc
gccgacatccgcgagtcgatccgcgagctggcctactaccggcaggcgctgttcgtggca
ccgcccggtccgacgaccgagcaggcgcaggccgcggcggccgcggtcgcgcgcgtcgcg
gcacccccgcagaccggtacgacccccggctga
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