Pseudactinotalea sp. HY158: GCE65_00805
Help
Entry
GCE65_00805 CDS
T06271
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psei
Pseudactinotalea sp. HY158
Brite
KEGG Orthology (KO) [BR:
psei00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psei03019
]
GCE65_00805 (hrpA)
Enzymes [BR:
psei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GCE65_00805 (hrpA)
Messenger RNA biogenesis [BR:
psei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GCE65_00805 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
nSTAND3
T2SSE
NACHT
ABC_tran
PhoH
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QGH68218
UniProt:
A0A5Q2VUL1
LinkDB
All DBs
Position
complement(170823..175175)
Genome browser
AA seq
1450 aa
AA seq
DB search
MSTSDHGTADQGPTRPGGSDGPRDQAGGAGRRGNRPRRGGRSRAGTRGVGGVDHRRSGHR
PPSERVLAARRAALPTVTYPEDLPVSARRDDIAAAIKEHQVVIVAGETGSGKTTQLPKIC
LDLGYGIDGTIGHTQPRRLAARTVADRIAEELGGTLGDAVGYQVRFTDRLSEGTLVKLMT
DGILLAEIQRDPLLRAYQVIIVDEAHERSLNIDFLLGYLRSLLPKRPDLKVIITSATIDS
ERFAEHFGAPGRPAPVIEVTGRTYPVELRYRPLVPDTDDESGTGEAGDEAGGGAGEQSWA
DDDLDQPSAICRAVDELMAAGPGDVLVFCSGEREIRDATEALADHLGPRYRRPGEARSSA
HAASAVEVLPLYARLSAAEQHRVFEAHTARRVVLATNVAETSLTVPGIRYVVDPGTARIS
RYSTRTKVQRLPIEPISQASANQRSGRSGRVAPGICIRLYSRRDFDSRPEYTEPEILRTS
LASVILQMTALGLGDIATFGFVDPPDSRAIRDGVQLLQELRALEEAAPHEPGPHRLTDVG
RKLAQLPIDPRLGRMLVEAERLGCVREVMIIVSGLSVQDVRERPAEHQQAADEKHRRFAD
PTSDFLSMLALWDYLKEQQAALSGSAFRRLVKSEFLHYLRIREWQDVHAQLRQLAKPLGL
TVHARGDATDPDRVHQALLAGLLSHIGSWDERRREFAGARGTRFVVFPGSHLAKKPPAWV
MAAELVETSRLFARQVARIQPEWAEELGAHLVKRSYSEPYWSTKHGAAMAREKVLLYGVA
IVADRPVPLARVDGALAREMFARHALVEGQWRSRHAFLDRNAELLAGAEDLAARTRRPEI
VADPEALVEFYLARLPESATTARHFDSWWKKARRTDPDLLTFTPELLTPGAETLDTDAFP
EQWHQGDLTLPLTYQFSPGQDADGVTVHIPIAVLPRVRPGGFDWLVPGMIEELTIATIRA
LPKRVRVQLVPAPDTARLIVAALPDARAAAEGAAPGAAGPSFAEAFAAAARRVRGVEVPV
ADIDPSKLPAHLRMTFRVHTERSGHRALLSEGPDLAALQHELARESGEAVRTAVRTALTE
ARRRAGKSDVPTPAELADPAGPSGDAADGNDPGGPAGTAEEGGDAPGPVTGPIEQAPLTA
WPATAAGEPWGELPGVVSTRLGTVTGGAPGTVGTAGGAQVRGYPAIVHESAGTGPGQIAL
RILSEEAAQAPAHRDGVLHLLATTLALPTNRVTSRWSPAEALTLAGGPDRSTAALVSDLH
IAAIRRLSAGADLAGVRTAAAFARRQQQLRDGLEDEIYAVARLVTAILTQARATEKTITA
TTSLALLDTLTDVKAQVAALLAPGFVASTPAERLPHLGRYLAAAEHRVRKAAQNPRADAD
KAWIVGELTEAWWAATQAATHGPSPDPGRREALAAVRWQLEELRVSFFAQQLGTVGTVSE
KRIRRALAEA
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacctccgaccacggcaccgcggaccagggcccgacccggcccggcggctccgac
ggcccccgcgaccaggccggcggggcgggccgacgcggcaaccgtccgcggcggggcgga
cgatcgcgcgccggcacccgcggagtaggcggagtcgaccaccgccgctccggtcatcgg
ccgccgagcgaacgggtgctcgcagcccggcgcgccgcgctgccgacggtcacctatccc
gaggacctgccggtgtcggcccggcgcgacgacatcgcggccgccatcaaggagcaccag
gtggtcatcgtggccggggagaccggctcgggcaagaccacccagctgccgaagatctgc
ctcgacctcggttacggcatcgacggcacgatcggccacacccagccccgccggctcgcg
gcccggaccgtggcggaccggatcgccgaggagctcgggggcaccctcggcgacgccgtg
ggataccaggtccgcttcaccgaccggttgagcgagggcacgctcgtcaagctcatgacc
gacgggatcctgctcgcggagatccagcgcgacccgctgctgcgcgcctatcaggtgatc
atcgtcgacgaggcgcacgagcgctccctcaacatcgacttcctcctcgggtacctgcgc
tcgctgctgcccaagcgccccgacctcaaggtgatcatcacctccgccacgatcgactcc
gagcgcttcgccgagcacttcggcgcacccggccggccggcgccggtgatcgaggtgacc
ggccgcacctacccggtcgagctgcgctaccggccgctcgtgcccgacaccgacgacgag
tcgggcaccggcgaggccggcgacgaggccggcggcggcgccggagagcagtcctgggcg
gacgacgacctcgaccagccgagcgcgatctgccgggcggtggacgagctcatggcggcc
gggccgggcgatgtgctcgtgttctgctccggcgagcgcgagatccgcgatgcgaccgag
gcgctcgccgatcacctcggcccgcgctaccggcgcccgggcgaggcgcgctcgagcgcc
cacgcggccagcgccgtcgaggtgctcccgctgtacgcgcggctctccgcggccgagcag
catcgcgtattcgaggcccacaccgcccggcgggtcgtgctcgccacgaacgtcgccgag
acctcgctcacggtgccgggcatccgctacgtggtcgacccgggcacggcgcgcatctcc
cgctattccacgcggacgaaggtgcagcgcctcccgatcgagccgatctcccaggcgagc
gcgaatcagcgctccgggcgctcggggcgggtcgcgccgggcatctgcatccgcctgtac
tcccgccgcgacttcgactcccgcccggagtacaccgagccggagatcctgcgcacctcg
ctcgcctcggtcatcctgcagatgacggccctcgggctcggggacatcgcgacgttcggt
ttcgtcgatccccccgattcccgggcgatccgcgacggcgtgcagctgctgcaggagctg
cgcgcgctcgaggaggcggcaccgcacgagccgggcccgcaccggctcaccgacgtcggc
cgcaagctcgcccagctgccgatcgacccgcggctcgggcggatgctcgtcgaggccgag
cggctcggctgcgtgcgggaggtgatgatcatcgtgtcggggttgagcgtgcaggacgtg
cgcgagcggccggccgagcatcagcaggccgccgacgagaagcatcgccgcttcgccgac
ccgacctcggacttcctctcgatgctcgcgctctgggactacctcaaggagcagcaggcc
gcgctctcgggcagcgcgttccgccgcctcgtcaagtcggagttcctccactacctgcgc
atccgggagtggcaggacgtccacgcccagctgcgccaactcgccaaaccgctcgggctc
accgtgcacgcgcgcggcgacgcgaccgatcccgaccgggtgcatcaggccctgctcgcc
ggcctcctctcccatatcggctcgtgggacgagcgccgccgcgagttcgccggcgcccgc
ggcacccggttcgtcgtcttcccgggctcgcacctggcgaagaagccgcccgcgtgggtc
atggcggccgagctcgtggagacctcgcggctgttcgcgcgccaggtcgctcgcattcag
cccgaatgggccgaggagctcggcgcgcacctggtcaagcgcagctattccgagccgtac
tggtccacgaagcacggcgcggcgatggcccgcgaaaaggtgctgctgtacggggtggcg
atcgtggccgatcgtcccgttccgctcgcgcgtgtggacggcgctctcgcccgtgagatg
ttcgctcgccacgcgctcgtcgagggtcagtggcgctcccggcacgcgttcctcgaccgg
aacgcggagctgctcgcgggcgcggaggacctcgcggcgcgcacccgccggcccgagatc
gtggccgatccggaggcgctcgtggagttctatctcgcgcggctgcccgagagcgcgacg
accgcccgccacttcgactcgtggtggaagaaggcgcggcgcaccgatcccgacctgctc
accttcaccccggagctgctcacccccggcgcggagaccctcgacaccgacgccttcccg
gagcagtggcaccagggggatctcaccctgccgctcacctaccagttctcccccggccag
gacgcggacggcgtgaccgtgcacatcccgatcgcggtgctgccgcgggtgcgcccgggc
gggttcgactggctcgtgccggggatgatcgaggagctgacgatcgccacgatccgggcg
ctgcccaagcgggtgcgggtccagctcgtgccggcaccggacacggcacggctcatcgtc
gccgcgctgccggatgcccgcgccgccgccgagggggccgcccccggggcggccgggccc
tcgttcgccgaggcgttcgcggcggcggcccggcgggtgcggggcgtcgaggtgccggtc
gccgacatcgacccctcgaagctgcccgcgcatctgcggatgacgttccgcgtgcacacc
gagcggagcgggcaccgcgcgctcctgtccgaggggcccgacctggccgccctccagcac
gagctcgcccgcgaatccggggaggcggtgcgcaccgccgtccgaacggcactgaccgag
gcccgccgccgggccgggaagtccgacgtgcccactccggcggagctcgcggatccggcg
ggcccgtcgggcgacgcggccgacgggaacgatccaggcggaccggccggcacggccgag
gagggcggcgacgcgccgggcccggtcaccgggccgatcgagcaggcgccgctgaccgcc
tggccggccacggccgcgggcgagccgtggggagagctgccgggcgtcgtctccacgcgg
ctcgggaccgtgacgggaggcgcgccggggacggtcggaacggccggtggagcgcaggtg
cgcggctatccggcgatcgtgcacgaatcggccgggacgggtcccgggcagatcgcgctg
cggatcctctcggaggaggccgcgcaggcgccggcgcaccgggacggcgtgctgcacctg
ctcgcgaccacgctcgcgctgcccacgaaccgggtgacgagccggtggagcccggccgag
gcgctcacgctcgccggcggtccggaccgctcgaccgcggcgctcgtgagcgatctgcac
atcgccgcgatccggcggctgagcgcgggggcggaccttgcgggcgtacggacggcggcc
gcgttcgcgcgccggcagcagcagctgcgggacgggctcgaggacgagatctacgcggtc
gcgcggctcgtcacggccatcctgacccaggcccgggcgaccgagaagaccatcacggcc
accacctccctcgccctgctcgacacgctcaccgacgtcaaggcgcaggtcgcggcgctg
ctcgcccccggcttcgtggcaagcacgcccgcggagcggctgccgcacctgggccgctac
ctcgccgccgccgagcatcgggtgcgcaaggcggcccagaatccgcgcgcggacgccgac
aaggcctggatcgtgggcgagctgaccgaggcctggtgggcggcgacccaggcggccacg
cacggcccgtcgccggatccgggccggcgggaggcgctggcggcggtgcgctggcagctc
gaggagctccgggtcagcttcttcgcccagcagctcggcacggtgggaaccgtgagcgag
aagcggatccggcgggccctcgccgaggcctag
DBGET
integrated database retrieval system
