Pseudactinotalea sp. HY158: GCE65_03470
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Entry
GCE65_03470 CDS
T06271
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
psei
Pseudactinotalea sp. HY158
Pathway
psei03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GCE65_03470 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psei03400
]
GCE65_03470 (mfd)
Enzymes [BR:
psei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCE65_03470 (mfd)
DNA repair and recombination proteins [BR:
psei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GCE65_03470 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGH68662
UniProt:
A0A5Q2VSS5
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All DBs
Position
797956..801642
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AA seq
1228 aa
AA seq
DB search
MNLSALVPALAHDPAVATLVEAVPARGALDITAAAGARAPLIARLVDRTDRPIVVVTATG
RDADDLAAAVGAYLPPEHVAVFPSWETLPHERLSPRSDTVAQRIAVLRRLTHAEGPGQAA
GERDEESAATRGTAGSTDPIRVLILPVRSLLQPIPAGLGDLEPVTVKAGDRLAIEDLTRG
LVDAAYTPVDMVGRRGEFAVRGGIVDVFAPTASHPQRIEFFGDEVDEIRWFSAADQRSLE
ISEDGMWAPPCREILLTEQVRDRARALKDRLPGAADMLDKLSEGIAVEGMESLAPALVDR
MESVLEVVPAESLLVLCDPERVRGRAHDLVATTEEFLAAAWTSAAAGSSTPLDLSEASFA
TLTDTREIAAERGLGWWTVGPFGLDEELADLVPDDEEATAAVTLPSRDVEGYRGDIEAAI
TDLRDLTRQGWRLVLVTEGPGPARRLTDQLLAAEVPARLVPALVPAGADARDDEDPELPP
AGLVLVTTARIRRGFVSEPLRLALFTEADLTGRAGTSTRDMRTMPSRRRNVVDPLALRAG
DFVVHEQHGVGRFIELVQRTIGTGSNATTREYLVIEYASSKRGQPGDRLFVPTDSLDQVT
KYTGGESPSLNKMGGSDWAKTRSRARKAVKEIAAELIRLYAARMATQGHAFAPDTPWQAE
LEDAFAFVETPDQLATIEEVKADMEKSVPMDRLICGDVGYGKTEIAVRAAFKAVQDGKQV
AVLVPTTLLVQQHLDTFSERYSGFPIVVEALSRFQTPAEAGRIRDEVRSGGVDVVIGTHR
LLTGEVRFKDLGLVIVDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIRE
MSTLATPPEERHPVLTYVGPYQEKQIAAAIRRELLREGQVFYVHNRVESIERTAARLGEL
APDARIAVAHGKMHEGQLEQVIMDFWEKRFDVLVCTTIVETGLDISNANTLIVERAETFG
LSQLHQLRGRVGRGRERAYSYFLYPPERPLTETAHDRLATIAAHTDLGAGMQVAMKDLEI
RGAGNLLGGEQSGHIAGVGFDLYVRMVSEAVAAYRGEEAEELPDLRVDLSVDAHIPHDYL
GEERLRLEAYAKIAQADTEERIAAVGEELSDRYGTPPLPVQRLFEVARLRNKARAAGLVE
ITTQGKFLRFAPVELAESAQLRLKRLYPGTVLKPAIRTILVPAPTTARVGGRPLRDEALV
DWVGVLIDSVLARRTSVAAAATAAAGPA
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
gtgaatctgtctgcccttgtgcccgccctcgcccacgatcctgcggtcgcgacgctggtc
gaggcggtgcctgcgcgcggcgccctcgacatcaccgccgccgccggcgcccgggcacca
ctcatcgcccgcctcgtggaccggaccgaccgcccgatcgtcgtggtcaccgcgaccgga
cgcgatgcggacgacctcgcggccgccgtcggtgcgtacctgccgcccgagcacgtggcg
gtcttcccgtcgtgggagaccctcccgcacgagcggctctcgccccgctccgacacggtg
gcccagcggatcgccgtactgcgcaggctcacccacgccgagggcccgggccaggccgcc
ggcgagcgtgacgaggagtcggccgccacgcggggaaccgcgggcagcacggacccgatc
cgggtgctcatcctgccggtgcgctcgctcctgcagccgatccccgccgggctcggagac
ctcgaaccggtgacggtcaaggccggggaccggctcgcgatcgaggacctgacccgcggg
ctcgtcgacgccgcctacaccccggtcgacatggtcggccggcgtggcgagttcgccgtg
cgcggcggcatcgtcgacgtgttcgcgccgaccgcctcccatccccaacggatcgagttc
ttcggcgacgaggtggacgagatccgctggttctccgccgccgaccagcgctccctcgag
atctccgaagacggcatgtgggctccgccctgccgcgagatcctcctgaccgagcaggtc
cgcgaccgggcccgggcactcaaggaccgcctccccggcgcggccgacatgctcgacaag
ctctccgagggcatcgccgtcgagggcatggagtccctcgcccccgcgctcgtggaccgg
atggaatcggtgctcgaggtggtcccggccgagtcgctgctggtgctgtgcgatccggaa
cgggtccgcgggcgggcgcacgacctcgtggccacgacggaggagttcctcgcggccgcc
tggacctcggccgccgccgggtcgagcaccccgctcgacctgtccgaggcctccttcgcc
accctcaccgacacccgcgagatcgccgccgagcgcggcctgggctggtggaccgtcggg
ccgttcggactcgacgaggaactggccgacctggtccccgacgacgaggaggccaccgcg
gccgtcaccctcccgagccgggacgtcgagggctaccgcggcgatatcgaggccgcgatc
acggacctgcgcgacctcacccggcagggctggcggctcgtgctcgtgaccgaggggccc
gggcccgcccgcaggctcaccgatcagctgctcgccgccgaggtacccgcccggctcgtg
ccggcgctcgtccccgcgggcgccgatgcccgcgacgacgaggacccggagctcccgccg
gccggcctcgtgctcgtgaccacggcccggatccggaggggattcgtgtccgagccgctg
cggctcgcgctcttcaccgaggccgacctcaccggccgggccggcacctcgacccgggac
atgcgcacgatgccctcccggcggcgcaacgtggtcgacccgctcgcgctgcgggccggg
gacttcgtggtgcacgagcagcacggcgtgggccggttcatcgaactcgtccagcgcacg
atcggcacgggctccaacgccaccacgcgcgaatatctcgtgatcgaatacgcctcctcc
aagcggggccagcccggcgaccggctcttcgtgcccaccgactccctcgaccaggtgacc
aagtacaccggtggcgagtccccctcgctcaacaagatgggcggttcggactgggccaag
accaggtcccgggcccgcaaggcggtcaaggagatcgccgccgagctcatccggctctac
gccgcccggatggccacgcagggacacgcgttcgcgcccgacactccgtggcaggccgag
ctcgaggacgcgttcgcgttcgtcgagacccccgaccagctcgccacgatcgaggaggtc
aaggccgacatggagaagtcggtgccgatggaccggctcatctgcggggacgtgggctac
ggcaagaccgagatcgccgtgcgggccgcgttcaaggcggtccaggacggcaaacaggtc
gcggtgctcgtgcccacgacgctgctcgtgcagcagcacctcgacaccttctccgagcgt
tactccgggttcccgatcgtggtcgaggcgctctcccgattccagacgccggcggaggcc
ggccggatccgcgacgaggtccggtcgggcggggtcgacgtcgtcatcggcacgcaccgc
ctcctcaccggtgaggtccgcttcaaggacctcggcctcgtgatcgtcgacgaggagcag
cgcttcggggtcgagcacaaggagaccctcaagcagctgcgcacgaacgtcgacgtgctg
gccatgagcgcgaccccgatcccgcgcaccctcgagatggccgtcacggggatccgggag
atgtccaccctggcgaccccgcccgaggaacggcaccccgtgctcacctatgtcggtccg
taccaggagaagcagatcgctgcggcgatccgccgggagctcctgcgggaggggcaggtg
ttctacgtgcacaaccgggtcgagtcgatcgaacgcaccgccgcccggctgggcgagctc
gcccccgatgcccggatcgccgtggcccacgggaagatgcacgagggccagctcgagcag
gtcatcatggacttctgggagaagcgtttcgacgtgctcgtgtgcacgaccatcgtcgag
accggcctggacatctcgaacgcgaacacgctcatcgtcgagcgggccgagacgttcggg
ctgagccagctccaccagttgcgcggccgggtgggccgcggccgggagcgcgcctactcc
tatttcctctacccgcccgaacggccgctcaccgagaccgcccacgaccggctcgcaacg
atcgcagcccacaccgacctcggtgccggcatgcaggtcgccatgaaggacctggagatc
cgcggcgcgggcaacctgctcggcggcgaacagtcgggccacatcgccggcgtcggcttc
gacctgtacgtgcgcatggtctccgaggcggtcgcggcctaccgcggggaggaggccgag
gagctgccggatctgcgggtcgacctgtccgtcgacgcccatatcccgcacgactacctg
ggtgaggaacgcctgcggctcgaggcgtacgcgaagatcgcccaggccgacaccgaggag
cggatcgccgcggtcggcgaggaactctccgaccgctacggcacgcccccactgccggtt
cagcgcctgttcgaggtggcccggttgcggaacaaggcgcgcgccgcggggctcgtcgag
atcaccacgcagggaaagttcctgcgcttcgcgccggtggaactggccgagtccgcgcag
ctgcggctcaagcggctctatccgggcacggtgctcaagccggcgatccgcaccatcctc
gtgcccgccccgaccaccgcccgcgtcggtgggcggccgctgcgcgacgaggcgctcgtc
gactgggtgggggtcctcatcgactccgtgctcgcccgccggaccagcgtggccgcggca
gcgacggcggccgcgggaccggcatga
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