Pseudomonas sediminis: HNQ25_01415
Help
Entry
HNQ25_01415 CDS
T07154
Symbol
tssC
Name
(GenBank) type VI secretion system contractile sheath large subunit
KO
K11900
type VI secretion system protein ImpC
Organism
psej
Pseudomonas sediminis
Pathway
psej02025
Biofilm formation - Pseudomonas aeruginosa
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
HNQ25_01415 (tssC)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
psej02044
]
HNQ25_01415 (tssC)
Secretion system [BR:
psej02044
]
Type VI secretion system
Imp/Vas secretion system core components
HNQ25_01415 (tssC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VipB
VipB_2
RRF
BMFP
DUF1103
Motif
Other DBs
NCBI-ProteinID:
QNH01415
UniProt:
A0ABX6SJW5
LinkDB
All DBs
Position
complement(294634..296127)
Genome browser
AA seq
497 aa
AA seq
DB search
MSEQLQHDQAALASTEQTSEFASLLMQEFKPKTERAKEAVETAVRTLAEQALAQTDLISN
DAIKSIESIIAAIDAKLTAQVNQIIHHNDFQQVESAWRGLHYLVNNTESDEQLKIRVLNI
SKTELHKTLKKFKGTAWDQSPVFKKLYEEEYGQFGGEPYGCLVGDYYFDQSPPDVELLGE
LSKVCAAMHAPFISAASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYIG
LTMPRFLARLPYGAKTDPVEAFAFEESTDGADSSKYTWANAAYAMAVNINRSFKHYGWCS
RIRGVESGGEVPNLPAHTFPTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDF
AAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRFAHYLKCIVRDKIGSFKERDEM
QLWLQDWILKYVDGDPAHSTETTKAQHPLAAAEVVVEEVEGNPGYYNSKFYLRPHYQLEG
LTVSLRLVSKLPSAKGA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaacagttgcaacacgaccaggccgcactggccagcaccgagcagaccagcgaa
ttcgcttcgctgctgatgcaggaattcaaacccaagaccgagcgtgccaaggaggcggtg
gaaacggccgtgcgtaccctggccgagcaggcgctggcgcagaccgatctgatctccaac
gatgcgatcaagtcgatcgagtcgatcatcgcggccatcgacgccaagctcaccgcgcag
gtcaaccagatcattcaccacaacgatttccagcaggtggagagtgcctggcgtggcctg
cactatctggtcaacaacaccgagagtgacgagcagctcaagattcgcgtgctcaacatc
tccaagacggagttgcacaagactctgaagaaattcaagggcaccgcctgggaccagagc
ccggtgttcaagaagctctacgaagaggaatacggccagttcggtggcgagccctacggc
tgcctggttggcgactactacttcgaccagtcgccgcccgatgtcgagctgctcggcgag
ctgtccaaggtttgcgcggcgatgcacgcgccgttcatttcggccgcatcgccaaccgtc
atgggcatgggctcctggcaggagctgtccaacccgcgtgacctgaccaagatcttcacc
acgccggaatacgccggctggcgctcgctgcgcgaatccgaggattcccgctacatcggc
ctgaccatgccgcgcttcctggcccgcctaccttacggcgccaagaccgacccggtggag
gccttcgccttcgaggaaagcaccgacggcgccgacagcagcaagtacacctgggccaac
gctgcctatgccatggcagtcaacatcaaccgttcgttcaagcactacggctggtgctcg
cgcattcgcggcgtcgagtcgggcggtgaagtgccgaacctgccggcgcacaccttcccc
accgacgacggtggcgtggacatgaagtgcccgaccgagatcgccatctccgaccgccgc
gaggccgagctggccaagaacggtttcatgccgctgctgcacaagaagaacaccgacttc
gccgccttcatcggtgcgcagtcgctgcaaaaaccggccgagtacgacgatccggacgcc
accgccaacgccaacctggccgcgcgcctgccgtacctgttcgccacctgccgcttcgcg
cattacctgaagtgcatcgttcgcgacaagatcggctcgttcaaggagcgcgacgaaatg
cagctgtggctgcaggactggatcctcaagtacgtcgacggtgaccccgcgcactccacc
gagaccaccaaggcgcagcatccgctcgccgctgccgaagtcgtggtcgaggaggtcgag
ggcaaccccggctactacaactcgaagttctacctgcgcccgcactatcagctcgaaggg
ctgacggtgtcgctgcggctggtttccaaactgccgtcggccaagggcgcctga
DBGET
integrated database retrieval system
