Pseudomonas sediminis: HNQ25_01940
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Entry
HNQ25_01940 CDS
T07154
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
psej
Pseudomonas sediminis
Pathway
psej03030
DNA replication
psej03430
Mismatch repair
psej03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HNQ25_01940
03430 Mismatch repair
HNQ25_01940
03440 Homologous recombination
HNQ25_01940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psej03032
]
HNQ25_01940
03400 DNA repair and recombination proteins [BR:
psej03400
]
HNQ25_01940
Enzymes [BR:
psej01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HNQ25_01940
DNA replication proteins [BR:
psej03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HNQ25_01940
DNA repair and recombination proteins [BR:
psej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HNQ25_01940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
QNH01516
UniProt:
A0ABX6SJC7
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All DBs
Position
complement(414491..415198)
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AA seq
235 aa
AA seq
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MSERAAQDWPQLFASLAESSRDPRLRAFYGAGCVAADTPLAEVPLVALDVETTGLDPREH
AIVSLGLVPLSLQRIRCSEARYWVVKPTSELSAESVTFHHITHSDIRHAPRLASVLEELL
EALAGKVVVVHYRNIERSFLDQAVRQHLGEGLIFPTIDTMELEARLHPKRTVSWWDRLRG
REPISIRLADSRLRYGLPLYSAHHALTDALACGELLQAQVARHYPGHTPVGAVWG
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagcgcgcagcccaggactggccgcaactgttcgccagcctcgccgaaagcagc
cgcgacccgcgcctgcgcgccttctacggcgccggctgcgtcgccgccgatacgccattg
gcggaagtaccactggtggcgctggacgtggaaaccaccggcctcgacccgcgcgaacat
gccatcgtcagccttggcctggtgccgctgagcctgcagcgtatccgctgcagcgaggcg
cgctactgggtggtcaaacccaccagcgagttgagtgccgaatcggtcaccttccaccac
atcacccacagcgacatccgccacgccccacgcctggccagtgtgctcgaagagctactg
gaagccctggccggcaaggtggtggtggtgcactaccgcaatatcgaacgcagcttcctc
gaccaggccgtgcgccagcacctcggcgaagggctgatcttccccaccatcgacacaatg
gaactggaagcccgcctgcaccccaagcgcaccgtaagctggtgggaccgcctgcgcggc
cgcgagcccatttccatccgcctggccgacagccgcctgcgctacggcctaccgctgtac
tcggcgcaccatgcgctgaccgatgcgttggcctgtggcgagctgctgcaggcgcaggtg
gcgaggcactatccggggcatacgccagtgggggcggtctggggctga
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