Pseudomonas sediminis: HNQ25_04880
Help
Entry
HNQ25_04880 CDS
T07154
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psej
Pseudomonas sediminis
Pathway
psej03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HNQ25_04880 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psej03021
]
HNQ25_04880 (rpoC)
03400 DNA repair and recombination proteins [BR:
psej03400
]
HNQ25_04880 (rpoC)
Enzymes [BR:
psej01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HNQ25_04880 (rpoC)
Transcription machinery [BR:
psej03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HNQ25_04880 (rpoC)
DNA repair and recombination proteins [BR:
psej03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HNQ25_04880 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
ApbA_C
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
QNH02067
UniProt:
A0ABX6SKM9
LinkDB
All DBs
Position
1028846..1033045
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQIEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLDHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFKDSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAVNAKGEGRVFADLQEVDRVFRAG
EASLHARVKVRINEVIKDRDGSITKNTRIVDTTVGRALLFQIVPAGLSYDVVNQSMKKKA
ISKLINQCYRTVGLKDTVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEPVVDREGKTVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLLMTPHIEGGDVVEPLGERVL
GRVIAKDVFKPGTEDVIVPAGTLIDEQWVEFIELNSVDEVVVRSPITCETRFGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGAIRL
HNLKHVERVDGNLVAVSRSGELAVADEFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDPKDRPAAGKDIRPAIKM
VDANGKELLLPGTDVPAQYFLPANALVGVADGAQIAVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEISGTISFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEVSESGDSSFIKGDQMELTQVLGENERLAEEDKFVAKYTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRKRDADKPVR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcagatcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtaccttcaagccagagcgcgatggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcctcaagcac
cgcggtgtgatctgcgagaagtgcggcgttgaagtagcactggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccggttgcccatatctggttcctcaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgacatcgagcgcgtgctctat
ttcgagagctacgtcgtgatcgacccgggcatgaccaccctcgagaaggggcagctgctg
aacgacgagcagtacttcgaagccctcgaagagttcggtgacgacttcgatgcgcgtatg
ggcgccgaggccgtgcgcgagctgctgcacgccatcgacctggatcatgagatcggccgc
ctgcgtgaagagattccgcagaccaactccgagaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagccttcaaggactccggcaacctgccggagtggatggtgctgacc
gttctgccggttctgccgccggatctgcgtccgttggttccgttggatggcggccgcttc
gcgacttccgatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctcgacaacggccgtcgcggtcgtgccatcactggctcgaac
aagcgtccgctgaagtcgcttgctgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgcgtggactactccggtcgttccgttattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgtgagctgccggaagtgtgggacgttctcgctgaagtgattcgcgaacacccc
gtactgctgaaccgtgcacctaccctgcaccgtctgggcatccaggcgttcgagccggta
ctgatcgaaggtaaagcgatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgacgctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacatcctgtcgcccgccaacggtgagccgatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccgttaacgcc
aagggcgaaggtcgcgtattcgccgacctgcaggaagtcgaccgcgtgttccgcgcgggc
gaagcgtccctgcacgcccgtgtaaaagtgcgtatcaacgaggtcatcaaagaccgcgac
ggcagcatcaccaagaacacccgtatcgtcgacaccaccgtcggccgtgcgctgctgttc
cagatcgtaccggccggcctgtcctacgacgtggtcaaccagtcgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcaccgttggcctgaaggacaccgtcatcttc
gctgaccagctgatgtacaccggtttcgcttactcgaccatctccggtgtgtcgatcggc
gtgaacgacttcgtcatcccggacgagaaggcgcgcatcatcgacgccgccaccgaggaa
gtgaaggaaatcgaatcgcagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtgatcgacctctggtcgaaggccaacgatgaagtctccaaggcgatgatggccaac
ctctcgaaagagccggttgtcgatcgcgaaggcaagaccgtcgagcaggagtccttcaac
tccatgtacatgatggcggactccggtgctcgtggtagcgccgcccagatccgtcagctg
gccggtatgcgtggtctgatggccaagccggacggctccatcatcgaaacgccgatcacc
gcgaacttccgcgagggtctgtcggttctgcagtacttcatctccactcacggtgctcgt
aaaggtctggcggataccgcactgaagaccgcgaactccggttacctgactcgtcgtctg
gtcgacgtggcccaggacctggtggtgaccgagattgattgcggtaccgagcacggtctg
ctgatgacgccgcacatcgaaggcggcgacgtggtcgagccgctgggtgagcgcgtactg
ggtcgagtgatcgccaaggacgtgttcaagcctggcaccgaggacgtcatcgttccggcc
ggcaccctgatcgacgagcagtgggtcgagttcatcgagctgaacagcgtcgacgaagtg
gtcgtgcgttcgccgatcacctgcgaaacccgtttcggcatctgcgccaagtgctacggc
cgcgatctggctcgtggtcaccaggtcaacatcggtgaagctgtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacctcggctgccgacagcgtccaggtgaagaacggtggtgcgatccgtctg
cacaacctcaagcacgtcgagcgcgtggacggcaatctggtagcggtttcccgctccggc
gagctggctgtggctgacgagttcggtcgtgagcgtgagcgctacaagctgccgtacggt
gccgtgatttccgtgaaggaaggtgacaaggtcgacgctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgtgaccgaaatgaagggtaccgtgaccttcgtcggcatg
gaggagggcatcaccatcaagcgccagaccgacgaactgaccggtctgaccaacatcgag
gttctcgatccgaaggatcgtccggctgctggcaaggacattcgtccggccatcaagatg
gtcgacgccaacggcaaggaactgctgctgccgggtaccgacgttcccgctcagtacttc
ctgccagccaacgccctggtcggcgtggctgacggtgcgcagatcgcggtcggtgacgtt
atcgcccgtatcccgcaagagacctcgaaaactcgcgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcccgtcgtccgaaggaagcttcgatcctggccgaaatcagc
ggcaccatttcgttcggtaaagagaccaagggcaagcgccgtctggtcatcaccccgacc
gatggcagtgatccgtacgaggagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggcccgagcgatccgcacgacatc
ctgcgtctgctgggcgtgagcgcgctggccaagtacatcgtcaacgagatccaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgtaaggtagaagtcagcgagtccggcgattcgtccttcatcaagggcgatcaaatg
gagctcacccaggttctgggcgagaacgagcgtctggctgaagaggacaagttcgtcgcc
aagtacacccgcgtactgctgggtatcaccaaggcgtcgctgtccaccgagtcgttcatc
tcggcagcgtccttccaggaaaccactcgcgtcctcaccgaggcagcggttactggcaag
cgcgactacctgcgtggtctgaaagagaacgtggtcgtgggtcgcctgatcccggctggt
accggtctggcctatcacagcgagcgcaagcgcaagcgtgatgccgacaagccggtacgt
gtcagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggaaattga
DBGET
integrated database retrieval system
