Pseudomonas sediminis: HNQ25_05960
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Entry
HNQ25_05960 CDS
T07154
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psej
Pseudomonas sediminis
Pathway
psej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNQ25_05960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psej03019
]
HNQ25_05960
Enzymes [BR:
psej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HNQ25_05960
Messenger RNA biogenesis [BR:
psej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNQ25_05960
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
CMS1
AWPM-19
Motif
Other DBs
NCBI-ProteinID:
QNH02274
UniProt:
A0ABX6SKG0
LinkDB
All DBs
Position
1240591..1241934
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AA seq
447 aa
AA seq
DB search
MTFASLGLIEPLLRTLADLDYQTPTPVQSQAIPAVLKGRDLMAAAQTGTGKTAGFALPVL
QRLTLEGPQVTSNSVRALVLTPTRELAEQVLQSFLTYGQHLPLTSYAVYGGVSINPQMMK
LRKGVDVLVATPGRLLDLYRQNAVKFSQLQTLVLDEADRMLDLGFARELDELFSALPKKR
QTLLFSATFSDAIRQMAGELLRDPLSVEVSPRNAAAKSVKQWLIPVDKKRKSELFLHLLQ
AKRWGQVLVFAKTRKGVDQLEQELLAMGVAADSIHGDKPQPSRLRALERFKAGEVQILVA
TDVAARGLDIDDLPLVVNLDLPINAEDYVHRIGRTGRAGSTGEAISLVCADEVDQLAAIE
NLTQQLIKRVDEPDFIPDHRVPQTAVGGQVLKKPKKPKQKLIPGAAKPAGKGNIHLGRWF
EEEDAKPKAKAVRKVPSFGSKPKGGKK
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgaccttcgcttccctcggtttgatcgagccgctgctgcgtacccttgctgacctcgac
taccagacgccgaccccggtgcagagccaggccattcccgccgtgctcaagggtcgcgac
ctgatggcggcagcacagaccggtaccggcaagaccgccggttttgccctgccggtgctg
caacgcctgactctggaaggcccgcaggtcaccagcaacagcgtgcgtgcgctggtgctg
acgcccacccgcgaactggccgagcaggtgctgcagagcttcctgacctacggccagcac
ctgccgttgaccagctacgcggtgtacggcggggtcagcatcaacccgcagatgatgaag
ctgcgcaagggtgtcgacgtgctggtggccacgccaggtcggctgctcgacctgtatcga
cagaacgccgtgaaattctcccagctgcagaccctggtgctggatgaagccgaccgcatg
ctcgacctggggtttgcccgcgagctggatgagctgttcagcgcgctgccgaaaaaacgc
cagaccctgctgttctccgctacgttctccgatgccattcggcagatggctggcgagttg
ctacgtgacccgctgtcggtagaagtgagcccacgcaacgccgccgccaagagcgtcaag
caatggctgatcccggtggacaagaagcgcaagagcgagctgttcctgcacctgctgcag
gcaaagcgttggggccaggtgctggtgttcgccaagacccgcaagggcgtcgaccagctg
gagcaggagctgctggccatgggcgtggccgccgactcgatccacggcgataagccgcag
ccgagccgcctgcgcgcactggaacgcttcaaggctggcgaggtgcagatactggtggcc
accgatgtggccgcgcgtggcctggatatcgatgacctgccgctggtggtaaacctcgat
ctgccgatcaacgccgaggactacgtgcaccgcatcggccgaaccggtcgtgccggtagc
acgggcgaggcgatctccctggtctgcgccgacgaggtggatcagctggcggctatcgag
aacctgacccagcagctgatcaagcgtgtcgacgagcctgacttcattcccgatcaccgc
gtaccgcagacggcggtgggtggccaggtgctgaaaaaaccgaagaagcccaagcagaaa
ctgatccccggtgccgccaaaccggcgggcaagggcaatatccacctcggccgctggttt
gaggaagaggacgccaagcccaaagccaaggcggtgcgcaaggtgccgagcttcggcagc
aagcccaagggtggcaagaagtag
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