Pseudomonas sediminis: HNQ25_11590
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Entry
HNQ25_11590 CDS
T07154
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
psej
Pseudomonas sediminis
Pathway
psej03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
HNQ25_11590 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psej03400
]
HNQ25_11590 (recD)
Enzymes [BR:
psej01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
HNQ25_11590 (recD)
DNA repair and recombination proteins [BR:
psej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HNQ25_11590 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
AAA_11
Helicase_RecD
AAA_22
Viral_helicase1
SH3_13
UvrD-helicase
AAA_16
TraI_hel_assoc_N
SLFN-g3_helicase
nSTAND3
AAA_28
AAA_17
Mg_chelatase
DEAD
NTPase_1
PhoH
ATPase
T2SSE
AAA_7
AAA_25
AAA_29
NACHT
TrwB_AAD_bind
AAA_18
AAA_5
GvpD_P-loop
AAA_24
Motif
Other DBs
NCBI-ProteinID:
QNG98979
LinkDB
All DBs
Position
2481710..2483740
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AA seq
676 aa
AA seq
DB search
MSTTLVSALRDRAELFALLSIWSERGWLRELDRALAQLFAELDPDASPLLLLGAALASHQ
LGQGHVCLDLAATLANPDFTLSLPPEGDDAQESMILPSQVLAGLSLKSWLAACAGSALLE
SEGAPLVLSGACLYMRRYWSYERQVAGNIARRLQASAAAPSDLAMRLASLFPDALVVDGK
RQSDWQKLACAMAAQGRFTLITGGPGTGKTTTVVRLLALLQEAAMATGEPLRLSLAAPTG
KAAARLTESIGAQVQSLALDERVREQIPTLVTTLHRLLGSRPGSRHFRHDAANPLPLDVL
VVDEASMIDLEMMASLLDALPSHARLILLGDKDQLASVEAGAVLGDLCREAESGGYSEAT
RTWLENQTGERLEDPALVVGDKALAQHIVMLRHSRRFGSGSGIGRLARAVNLGDAQSARA
TLATGTDDLHVLRLSGEQDRSLERFLIDGQGSAEPRPQGYAHYLQTMQMERPAPDADSQA
WDRWAGKVLAAFDQFQLLCAVRKGAWGVEALNERIAQALVRRGLLEQAHGWYEGRPVLVT
RNDYSLGLMNGDIGIALRLPEPPEVPGAPTRQVVRVVFPRNDGSGALRHILPSRLSAVET
VFAMTVHKSQGSEFAHCALILPDSLNPVLTKELVYTGITRARHWFSLIESRAGIFEQTVQ
RRVERRSGLREALEAL
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgacgcttgtgtcggccctgcgtgatcgcgccgaactctttgccttgctttct
atatggagcgagcgcggctggctgcgtgaactggatcgcgcgctggcgcaactgttcgcc
gagctggatccggacgcttcgcccctgttgctgctcggcgctgcactggccagtcaccaa
ttgggtcaggggcatgtctgcctggatctggcggcgaccttggccaacccggacttcact
ctgtccctcccgccggagggggatgacgcgcaagagtcgatgattctgccgtcccaggtg
ctggccgggctaagcctgaagtcctggctggcggcctgtgccggcagcgccttgctggag
tccgagggcgcgcctttggtgctcagtggcgcctgcttatatatgaggcgttactggagc
tatgaacgacaggtagccggcaacatcgctcggcgtctgcaggcgagtgccgctgcgccg
agcgatctggccatgcgcctggcctcactctttcctgacgcgctggtggttgacggcaag
cgccagagcgactggcagaagctggcttgtgcgatggctgcgcaggggcgcttcacgctg
atcaccggggggcctggaactggcaaaacgaccacggtggtgcgcctgctggcattgttg
caggaagcggccatggccactggtgaaccgctgcgcttgagcctggcggcgcctaccggc
aaggctgccgcgcgcctgaccgaatccatcggtgcgcaagtgcaatccctggcgctggac
gagcgcgtgcgtgagcagattccgacgttggtgacgacactgcatcgcttgctgggcagc
cgtcctggcagccggcattttcgtcacgatgccgccaaccctttgccgctggacgtgctg
gtggtcgacgaagcctccatgatcgacctcgaaatgatggccagcttgctggacgcacta
ccatcgcatgcgcgtctgattttgctgggcgacaaggatcagctcgcatcggttgaggcc
ggtgcggtattgggcgatctgtgccgagaggcggaaagcggtggctatagcgaggcgacg
cgcacctggctggaaaatcagacgggggagcggcttgaagatcctgcgctggtcgtaggg
gataaggcgctggcacagcacatcgtcatgctgcgtcactcacgccgcttcggtagtggc
tcgggcatcggtcgtttggcccgtgcggtgaacctgggcgatgcacagtcggcgcgagcg
accctggcaaccggtacggacgatctgcatgtattgcgtttatctggtgagcaggatcgt
tcgctggagcgattcttaatagacgggcagggcagtgctgagcctcgtcctcaggggtat
gcgcattatttgcagacgatgcagatggagcgtcccgctcccgatgctgattcgcaagcc
tgggatcgttgggccggtaaggtgctggcggcattcgatcagttccagctgctttgtgcg
gttcgcaaaggtgcatggggcgtggaggcgcttaatgagcgtattgcccaggcactggtg
cggcgcggcctactcgagcaggcgcatggctggtatgaaggtcggcctgtgctggtaacg
cgcaatgactacagcctgggcttgatgaatggcgatatcggcatcgcgctacgcttacct
gagccaccagaagttccgggcgcaccaacgcgccaagtagtacgagtggtattcccacgc
aatgatggcagcggcgccttgcgccatatcctgccgagtcgtctgagtgcggtagagacg
gtgttcgccatgaccgtgcacaaatcccagggctcggagttcgcccattgtgcgctgatc
ctgcccgatagcctcaatccagtgctgaccaaggagctggtgtataccggcatcacgcgt
gcccgccactggttcagcttgattgaaagccgagcaggtatcttcgagcagaccgtacag
cgacgtgtggaacgtcgtagcggtctgcgtgaggcgcttgaagcgctgtaa
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