Pseudomonas sediminis: HNQ25_15660
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Entry
HNQ25_15660 CDS
T07154
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
psej
Pseudomonas sediminis
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
psej03009
]
HNQ25_15660 (rlmD)
Enzymes [BR:
psej01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HNQ25_15660 (rlmD)
Ribosome biogenesis [BR:
psej03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HNQ25_15660 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
Cons_hypoth95
PCMT
TRM5-TYW2_MTfase
MTS
Methyltransf_11
RrnaAD
Methyltransf_23
Methyltr_RsmB-F
CMAS
Ubie_methyltran
UPF0020
PrmA
Methyltransf_15
Motif
Other DBs
NCBI-ProteinID:
QNG99732
LinkDB
All DBs
Position
complement(3349282..3350640)
Genome browser
AA seq
452 aa
AA seq
DB search
MARRSSNLRFQPSGGSRAAQVPVGKKQKLSIERLAGDGRGIAFEGGRTWFVSGALAGEQV
EARVLAARSQTVEARAERIIAASSERRAAPCVHADRCGGCNLQHMPHADQLALKQRTLAE
QFSRLGGVQPDEWAAPLTGPEFGYRRRARIAVRWDAKARQLQVGFRAEASQDIVAIDDCP
VLVQPLQPILTALPALLRSLEKPQAVGHVELFSGTAEALLLRHTAALTEADLSRLRAFCS
EHRAQLWLQGEGQPQPDDQAAELGFMLERWQLHLAYRPGDFVQVNGLVNEAMVAQALDWL
AVQPGERVLDLFCGLGNFALPLARQAAEVVAVEGVEAMVQRAAGNAQNNGLGNAHFFRAD
LSNPLACEAWAQGGFTAVLLDPPRDGALQVVRGMTELGARRLVYVSCNPTTLARDAAELV
QQGYRLRRAGILDMFAQTAHVEAMALFEKPEV
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atggccagacgcagctccaacctgcgctttcagcccagcggcggcagccgtgcggcgcag
gtgccggttggcaagaagcagaagctgtccatcgagcgtctggccggtgacggccgcggc
attgccttcgaaggtgggcgcacctggttcgtcagtggcgcactggccggcgagcaggtc
gaggcgcgggtactcgctgcccgcagccagactgtcgaggcgcgcgccgaaaggatcatc
gctgccagcagcgagcgccgcgcggcgccctgcgtgcacgctgaccgttgcggtggctgc
aatctgcagcatatgccccatgccgatcagttggccctgaaacagcgcacgctggccgag
cagttttcacgcctgggcggcgtgcagccagatgagtgggcagcgccgctgaccggtcct
gaattcggctaccgccgccgcgcgcgcattgccgtgcgctgggatgccaaagcgcgtcaa
ctgcaggtcggctttcgtgccgaggccagtcaggacatcgtggccatcgacgactgcccg
gtgctggtacagcccttgcagcctattctcactgcgttgccggcgctgttgcgcagtctg
gagaagccacaggcagtcggacacgtggagctgttcagcggtacggccgaagcgctgctg
ctgcgccacactgccgctctgacggaggccgatctgagtcgtctgcgcgcgttctgcagc
gagcatcgcgcgcagctatggctgcagggcgagggacaaccccagcctgacgaccaggcc
gctgagttgggcttcatgcttgaacgctggcaactgcacttggcctatcggccgggtgac
tttgtgcaggtcaatggtctggtcaacgaggcgatggtcgctcaggcgctagactggttg
gcagtgcaacctggcgagcgggtgctggatctgttctgcggcttgggtaatttcgccctg
ccgctggcgcggcaggccgctgaagtggtggctgtggagggtgtcgaggcgatggtgcag
cgtgccgcaggcaacgcgcaaaacaatggtttgggcaacgcgcactttttccgtgccgac
ctgtccaacccgctggcttgcgaggcctgggcgcagggcggttttaccgcggtgctgctt
gacccgccacgcgatggtgcgttgcaggtggtacgcgggatgacggagttgggcgcacgg
cgcctggtttacgtctcctgcaacccgactacgctggcgcgcgatgccgccgaactggtg
caacaggggtatcgtttgcgccgtgccgggattctcgacatgttcgcgcagaccgcgcac
gtcgaggcgatggctttattcgagaaacccgaggtctag
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