Pseudomonas sediminis: HNQ25_16340
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Entry
HNQ25_16340 CDS
T07154
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psej
Pseudomonas sediminis
Pathway
psej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNQ25_16340 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psej03019
]
HNQ25_16340 (rne)
03009 Ribosome biogenesis [BR:
psej03009
]
HNQ25_16340 (rne)
Enzymes [BR:
psej01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HNQ25_16340 (rne)
Messenger RNA biogenesis [BR:
psej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HNQ25_16340 (rne)
Ribosome biogenesis [BR:
psej03009
]
Prokaryotic type
rRNA processing factors
HNQ25_16340 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QNG99855
UniProt:
A0A7G7RAQ4
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All DBs
Position
3478166..3481216
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AA seq
1016 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQKLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GSERHGFLPLKEISREYFSKSPEGGRVNIKDVLKEGQEVIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSSEEMQ
WDLDYLLQLWSAIKEASTSRPAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEAL
SFIQQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALVSI
DINSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEK
VREALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLA
ILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPH
FEVQRLRDDSPEALSGQTSYEIAATAETEEAAAHPAAATRTLVRQEAAIKAAPRSSAPVA
AEPQAPLTPTKAPEPSLFKGLVKSLVSLFAGQEEEAKPAVVEKKNSERPPREERRNGRQQ
SRNRGGRRDEERKPREERAPREERQAREPREERQPREERAPREERAPREPREGQENRRER
KPREERAPREERVRELREPLDAAGNEQREERAERQPRGERQERQRPPREERQPRAEQAEA
LQDEALPNEEQLQDDEQDNNDGERPRRRSRGQRRRSNRRERQRDADGNLIESAENSEAAG
NEAQAAAPAAVATAAAVVAESVDSSEAVASEAPVNPAPAVEAPAAQVEEAPAAQPVEAQV
EATVTEVVEAPVAEKATEAESAAVEAPVVVEAPAAEPVAQAEPVAEVAQEPAPVSVEQAP
AAAAVPANATGRAPNDPREVRRRQREAERLAREAAQAATAAPVVEAAPAVEVAPAAEASA
PVEAEATAVETAPAVEPVAEAETTPVVSEQNVSEAVEQAQPEEETPADEEEVKPQA
NT seq
3051 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaattaacgcaactcagcccgaagagttgcgtgttgccctggtagat
ggccaaaaactctacgatctggacatcgagtccggcgcccgcgaacagaagaaggccaac
atctacaaaggccgcatcacccgcgttgaacccagccttgaagccgctttcgtcgatttc
ggttccgaacgccacggcttcctccccctcaaagaaatctcccgcgaatacttctccaag
tctcctgaaggcggccgcgtcaacatcaaggacgtgctcaaggaaggccaggaagtcatc
gtccaggtcgagaaagaagagcgcggcaacaagggcgcagctctgaccaccttcatcagc
ctggccggtcgttacctggtgctgatgccgaacaacccacgcgctggtggtatctcccgc
cgcatcgaaggcgaggagcgcaacgaactgcgcgaagcgctgaatggcctcaatgcacca
gccgacatgggcctgatcgtgcgtactgccggcctgggtcgttccagcgaagaaatgcag
tgggacctcgactacctgctgcaactgtggagcgccatcaaggaagcctccaccagccgc
cctgccccgttcctgatctatcaggaatccaatgtcatcatccgcgccatccgcgactac
ctgcgccaggacatcggcgaagtactggtcgacagcgtcgaagcccaggaagaagccctc
agcttcatccagcaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagc
gtgccgctgttcaaccgcttccagatcgaaagccagatcgaaaccgccttccagcgcgaa
gtgaagctgccgtccggcggctccatcgtcatcgacccgaccgaagccctggtgtccatc
gacatcaactcggcgcgcgccaccaaaggcagcgacatcgaggaaaccgcgctgcagacc
aacctggaagcggccgaagaaatcgcccgccaactgcgtctgcgtgacatcggcggcctg
atcgtcatcgacttcatcgacatgaccccggccaagaaccagcgcgccgtcgaagaaaag
gtgcgtgaagccctggaagccgaccgtgcccgcgttcaggtcggccgcatctcgcgcttc
ggcctgttggagatgtcccgtcagcgtctgcgtccgtccctgggtgagaccagcggcatc
gtctgcccgcgttgcaatggccaaggcatcatccgtgacgtcgaatccctgtcgctggcc
atcctgcgcctgatcgaagaagaagcgctgaaagatcgcaccgccgaagtccgcgcccag
gtaccgatcccggtcgccgccttcctgctcaacgagaaacgcaactcgatcaccaagatc
gaactgcgcacccgtgcgcgcatcgtgatcctgccgaacgatcacctggaaacgccgcat
ttcgaagtccagcgcctgcgtgacgacagcccggaagcgctgagcggccagaccagctac
gaaatcgccgctactgcggaaaccgaagaagccgccgcccacccggccgctgccacgcgc
accctggttcgccaggaggccgcaatcaaagccgcgccacgcagcagcgccccggtcgca
gccgagccgcaagcgccgctgacgccgaccaaagcacctgagccgagcctgttcaaaggc
ctggtgaaatcgctggtcagcctgttcgccggccaggaagaagaagccaagccagctgtc
gtcgagaagaagaacagcgagcgtccaccgcgcgaagaacgccgcaacggtcgtcagcag
agccgtaatcgcggtggtcgtcgcgacgaagagcgcaagccgcgcgaagaacgtgctccg
cgtgaagagcgtcaggctcgcgagccgcgcgaagagcgccaacctcgtgaagagcgtgct
ccgcgtgaagaacgcgccccacgcgagccgcgtgaaggccaggaaaaccgccgcgaacgc
aagccgcgcgaagagcgcgctccgcgtgaagagcgcgtacgtgaactgcgcgagccactg
gacgccgctggcaatgagcaacgtgaagaacgcgccgagcgccaaccacgtggcgagcgc
caggaacgtcagcgtccgccgcgcgaagagcgtcagccacgtgctgagcaggccgaggct
ctgcaggatgaagccctgccaaacgaagaacagctgcaggatgacgagcaggacaacaac
gatggcgaacgtccgcgtcgccgctctcgtggccagcgtcgccgcagcaaccgtcgcgag
cgtcagcgtgatgccgacggcaacctgatcgaaagcgccgagaacagcgaagccgcaggt
aacgaagctcaagccgccgctccagctgccgtagccactgccgccgccgtggttgcagaa
agcgtcgatagcagcgaagccgttgccagcgaagctccggtcaacccagctccggctgtc
gaagcaccggctgctcaggttgaagaagcccctgctgctcaaccggtcgaggcgcaagtc
gaagctaccgtgactgaagtggtcgaagctcccgtcgcggagaaggcaactgaagcagag
tcggccgcagtcgaagcccctgtcgtcgtggaagctcctgctgccgagccggtcgcacaa
gctgagccggttgccgaagtcgcccaggagcctgctccggtatcggtcgaacaagcgcct
gctgccgcagcggttccggccaacgccaccggccgcgcgccgaacgacccgcgtgaagtg
cgtcgtcgtcagcgtgaagctgagcgcctggcgcgcgaagctgcacaggccgcgactgcc
gctccggttgtagaggctgcgccagcagtcgaagttgctccggccgccgaagcaagcgcc
ccggtagaagccgaagccactgcagtcgaaaccgctcctgcggtcgagccagtcgccgaa
gccgaaaccactcctgtcgtcagcgagcaaaacgtgagcgaagcagtagagcaagcgcag
ccagaagaagagacgccagccgacgaggaagaggtcaagccccaggcttga
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