Pseudomonas sediminis: HNQ25_16520
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Entry
HNQ25_16520 CDS
T07154
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psej
Pseudomonas sediminis
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psej03032
]
HNQ25_16520 (topA)
03400 DNA repair and recombination proteins [BR:
psej03400
]
HNQ25_16520 (topA)
Enzymes [BR:
psej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HNQ25_16520 (topA)
DNA replication proteins [BR:
psej03032
]
Prokaryotic type
DNA Topoisomerases
HNQ25_16520 (topA)
DNA repair and recombination proteins [BR:
psej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HNQ25_16520 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
QNG99889
LinkDB
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Position
complement(3514048..3516657)
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSQYVVKSSIGHIRDLPTSGSASATKEPAKRGKAAAGEA
PALSPKEKAKRQLFTRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR
EGEAIAWHLRESIGGDDSRYKRVVFNEITKKAIQDAFSKPGELDINRVNAQQARRFLDRV
VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVAREKEIRAFVPEEYWEVHADLGTAKNAKV
RFEVVREDGSAFKPVNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSNDAVEMVRGFIGSEYGDKYLPGKPNL
YSSKEGAQEAHEAIRPSDVNLRPTQLSGMERDAERLYDLIWRQFVACQMPPAEYLSTSVT
VAAGNFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMKEGEGLKLIQLDPSQHFTKPP
ARYSEASLVKELEKRGIGRPSTYAAIISTIQDRGYVTVHNRRFYAEKMGDIVTERLDESF
ANLMDYSFTATMEEHLDDVAQGEREWKHLLDEFYGDFKKKLEVAEAGEGGMRANQPTLTD
IPCRECGRPMMIRTASTGVFLGCSGYALPPKERCKATINLVPGDEIAADDEGESESRVLL
GKHRCPICSTAMDAYLLDETRKLHICGNNPDCTGYEIEQGQYRIKGYEGPSLECDKCGSQ
MQLKTGRFGKFFGCTNASCKNTRKLLKNGEAAPPKMDKVEMPELKCEKVDDTYVLRDGAS
GLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPDGRPAVIRYSRKTKE
QYVQSEVDGKPTGWRAFFDGGKWKVEDKR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcagccagtacgtggtgaagtcgagcatcggccacatccgtgacctgcctaccagc
ggctcggcaagcgccaccaaggagcctgccaagcgcggcaaggctgctgccggtgaggcg
cctgcgctgtcgcccaaggaaaaggccaaacgccagctgttcacccgcatgggtgtcgac
cccgagcatggctggaaggctaagtacgagatcctgcctggcaaggaaaaggtgatcgaa
gagctgcgccgcctggccaaggatgctgacaccatctatctcgcaaccgacttggatcgc
gaaggggaggccatcgcctggcacctgcgcgagtccatcgggggtgatgacagccgctac
aagcgtgtggtgttcaacgagatcaccaagaaggcgattcaggatgccttctccaagccc
ggtgagctggatatcaaccgcgtcaacgcccagcaggcacgccgtttcctcgaccgcgtg
gtgggctacatggtttcgccgctgctgtgggccaagatcgcccgtggcctgtctgccggt
cgcgtacagtcggtggcggtgaagctggtcgttgcgcgtgaaaaagaaatccgtgccttc
gtcccggaagaatactgggaagtgcacgccgatcttggcaccgcgaagaacgccaaggtg
cgcttcgaagtcgtgcgtgaagatggctcggccttcaagccggtcaacgaagcgcaggcc
atggcggcgctggagaaactcaaggcttccagctacagcgtggtcaagcgcgaagaccgc
ccgaccagcagcaagccgtcggcgcctttcatcacgtcgaccctgcagcaggctgcgagc
aaccgtctgggcttcggcgtgaagaagaccatgatgatggcccagcgtctctacgaggcc
ggctacatcacctatatgcgtacggactcgaccaacctgtcgaacgacgcagtggagatg
gtgcgtggcttcatcggcagcgagtacggcgacaagtacctgccgggtaagcccaatctg
tattcgagcaaggaaggcgctcaggaggcgcacgaagcgattcgtccttccgacgtcaac
ttgcgcccgacccagctgtccggcatggaacgtgatgccgagcgcctctatgacctgatc
tggcgtcagttcgtggcctgccagatgccgccagccgaatacctgtccaccagcgtcacc
gtggctgccggcaacttcgagctgcgcgccaagggccgtattctcaagttcgacggttac
acccgcgtgctgccgcagcagagcaagccgggcgaggacgacgtcctgccggaaatgaag
gagggcgagggcctcaagctgatccagctcgaccccagccagcacttcaccaagccgccg
gcgcgctattccgaagcgagcctggtcaaggaactggaaaagcgcggtatcggccgtccg
tccacctatgcagcgatcatttccaccattcaggatcgcggctacgtcacggtgcacaac
cgtcgtttctatgccgagaagatgggcgacatcgtcaccgagcgtctcgacgagagtttc
gccaacctgatggattacagttttaccgccaccatggaagagcatctcgacgatgtggcc
cagggtgagcgcgagtggaagcatctgctcgatgagttctacggtgacttcaagaagaag
ctcgaagtggccgaagcaggcgagggcggcatgcgtgccaaccagccgacgctgaccgac
atcccttgccgcgagtgcggtcggccgatgatgatccgcactgcctccaccggcgtgttc
cttggttgctccggttatgcgctgccgccgaaggaacgttgcaaggccaccatcaacctg
gtaccgggcgacgagattgctgccgacgacgagggtgagtccgagtcccgcgtgttgctt
ggcaagcatcgctgcccgatctgctccacggccatggatgcctatctgctggatgaaacc
cgcaagctgcacatctgtggcaacaaccccgattgcacgggttacgagatcgagcagggt
cagtaccgcatcaagggctacgaagggccaagcctggagtgcgacaagtgcggcagtcag
atgcagctcaagacgggccgcttcggcaagttcttcggttgcaccaatgccagctgcaag
aacacccgcaagctgctcaagaacggcgaagcggcgccgccgaagatggacaaggtggag
atgcctgagctcaagtgcgagaaggtggatgacacctacgtgctgcgtgacggtgcatcg
ggcctgttcctcgccgccagccagttccccaagaatcgcgagacgcgtgcacctctggtg
ctggaaatcgttccgcacaagcatgagatcgatcctaagtaccacttcctttgcgatgct
ccacagaaggaccctgatggccgcccagcggtgattcgctacagccgcaagaccaaggag
cagtacgtgcagtccgaggtcgatggcaaaccgaccggctggcgtgcgttcttcgatggc
ggcaaatggaaggtcgaggacaagcgctga
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