Pseudomonas sediminis: HNQ25_16870
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Entry
HNQ25_16870 CDS
T07154
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psej
Pseudomonas sediminis
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psej03019
]
HNQ25_16870 (hrpA)
Enzymes [BR:
psej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HNQ25_16870 (hrpA)
Messenger RNA biogenesis [BR:
psej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HNQ25_16870 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_25
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
NACHT
T2SSE
ABC_tran
Prp19
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QNG99958
UniProt:
A0ABX6SGK7
LinkDB
All DBs
Position
complement(3586804..3590820)
Genome browser
AA seq
1338 aa
AA seq
DB search
MTDLATLQNNLDHVMIAERHRLRRQLHELQKQPDEAKLAQWLERFQTSSDKVAARRSSIP
TMRYDDALPIAAKRDEIKAALEKSQVVVIAGETGSGKTTQLPKICLEIGRGVHGLIGHTQ
PRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSKDGTLIKLMTDGILLAETQHDRFLE
KYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKLIITSATIDLERFSKHFNDAPIIEV
SGRTYPVETWYRPLAAEVDEEGERLLDDLSIDQGILAALDEITEHERSVGKRPGDVLVFL
PGEREIREAAEVLRKANLRFTEVLPLYARLTPAEQQKIFAPMAGRKIVLATNVAETSLTV
PGIRYVIDSGTARISRYSYRAKVQRLPIEPVSQASANQRKGRCGRVEPGVCIRLYSEEDF
IGRPEFTDPEILRTNLAAVILQMLHLRLGSIEDFPFIEPPDGKAISDGFNLLQELSAVNR
ESQLTPIGRQLARLPIDPRLGRMVLEGAKQGSLEEILIVAAALSVQDPRERPMDRQQAAD
QAHAQWKDVDSDFAALINLWRGFEEKRQELGSNPLRTWCKKNFLNYMRLREWRDAHRQLV
LIARDLQLMGKGGQSRSDAQGEQTASTPQPTKDTRVNAIARQQAEASEAAVRAKNYAAVH
KAILAGLLSQIGQKTEEGDYLGARQRRFWIHPSSVIGRKKPNWIMAAELVETTKLFARMV
AKIAPDWIEPLAAHLVKKNHLEPHWEKKRGQVVAFEQVTLYGMIIVGRRPVHYGPIDPPV
AREMFIREGLVRGDINSRVRCLTANRQLLERLDELEAKSRRRDILADEETLFGYYEARIP
QDIYQAASFESWYKKGSAADPQLLIMREEDALARDAKEVTAAQYPDTLRIGELQLPLSYH
FEPNHPRDGVTLRVPAPLLPQLQPERLEWLVPGLLEAKCIALVRGLPKALRKNFVPVPDF
VGAALGKLVFGQGSLPQALGQELLRMTGARVSDEAWAEAAESIENHLKMNIEVVDAQGKF
LGEGRDLAELTARFAEASQAALAIPQQSDKPKAVEAKAFAEVAEKAQQKIAGLSMTVYPA
LVEEAGVVKEGRFPTQAEADFQHRRALQRLLLQQLAEQAKFLRGKLPGLTELGLLYRDIG
RVEALVEDILLASLDACILEGEATLPRDGAALAQLAERKRGDWTAHAERIARQVLEILKL
HHGLQKRFKGKIDLAQAMALNDIKQQLANLVYAGFVRETPGEWLKEIPRYLKAIEQRLDK
VGAQVQRDRVWTGELTGYWEQYKARTGKHAQEGKRDPQLTLYRWMLEEYRVSLFAQQLGT
KMAVSDKRLSKQWTLVEG
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atgactgacctcgccacgctgcagaacaacctcgaccacgtcatgatcgccgagcgccat
cgtttgcgccggcagttgcatgagctgcagaagcagcccgatgaggccaagctggcgcag
tggctggagcgtttccagacgtccagcgacaaggtggcggcgcgtcgcagcagcatcccc
accatgcgctacgacgatgcgttgccgattgccgccaagcgtgatgagatcaaggccgcg
ctggagaagagccaggtggtggtgatcgccggtgagaccggttcgggcaagaccacccag
ttgccgaagatctgccttgagattggtcggggtgtgcatggcttgatcggccatacccag
ccgcgtcgcttggctgcgcgcagtgtggccacaagggtggccgaggagatcggcacgccg
ctgggcgaactggtcggttatcaggtgcggttcgaggatcagagcaaggacggcacgctg
atcaagctgatgaccgacggcatcctgcttgccgagacccagcacgaccgctttctggaa
aagtacgacaccatcatcgtcgacgaggcgcacgaacgcagcctcaatatcgacttcctg
ctcggctacctgaagaccctgctgccgcgtcgccccgatctgaagctgatcatcacctcg
gcgaccatcgatctggagcgtttttccaagcacttcaacgacgcgccgatcatcgaggtg
tccggtcgcacctacccggtggaaacctggtatcgcccgctggcggccgaggtggatgag
gagggcgagcgtctgctcgatgacctgtccatcgaccagggcattctcgccgcgctggac
gagatcaccgagcacgagcgtagcgtgggcaagcgccctggcgacgtgctggtgttcctg
cccggtgagcgcgagattcgcgaggcggccgaggtactgcgcaaggccaatctgcgtttt
accgaggtgttgccgttgtatgcgcggctgacgccggccgagcagcagaagattttcgcg
cccatggccgggcgcaagatcgtgctggccaccaacgtcgccgaaacctcgctgaccgtg
ccgggcatccgttacgtgatcgacagcggcacggcgcgcatcagccgttacagctaccgc
gccaaggtgcagcgcctgcccatcgagccggtgtcgcaggccagcgccaaccagcgcaag
ggccgttgcgggcgggtcgagccgggtgtctgcattcgcctgtacagcgaggaggatttt
atcgggcgcccggaattcaccgacccggagattctgcgcaccaacctggcggcggtgatc
ctgcagatgctgcacctgcgcctgggcagcatcgaggatttcccctttatcgagccgcca
gatggcaaggccatcagcgacggtttcaacctgttgcaggagctgtcggcggtcaaccgt
gaaagccagctcacgcccattggccggcaactggcgcgcctgcccatcgatccgcgcctg
gggcgcatggtgctggaaggcgccaagcagggcagcctggaggagatccttatcgtcgcc
gccgcgctgtcggtgcaagacccgcgcgagcgaccgatggatcgccagcaggccgccgac
caggcgcacgcgcagtggaaggatgtggattccgactttgctgcgctgatcaacctgtgg
cgcggcttcgaggaaaagcgccaggagctgggcagcaacccgctgcgcacctggtgcaag
aagaatttcctcaactacatgcgcctgcgcgaatggcgcgacgcgcatcggcagttggtg
ctgatcgcccgtgacctgcagttgatgggcaagggcgggcagagccgctcagacgcgcag
ggcgagcaaacggcgagcacgccgcagccgaccaaggacacccgcgtcaacgccatcgcc
cgccagcaggccgaggccagtgaggcggcggtgcgggcgaagaactacgccgccgtgcac
aaggcgattctcgccggcctgctcagccagatcggccagaagaccgaagagggcgactac
ctcggtgcgcgccagcggcgtttctggattcacccatccagcgtgatcgggcgcaagaag
cccaactggatcatggccgccgaactggtggaaaccaccaagctgttcgcccgcatggtg
gcgaagatcgcgccggactggatcgagccgctggccgcgcatttggtgaagaagaaccat
ctggaaccgcactgggagaagaagcgcggccaggtcgtggcgttcgagcaggtcaccctg
tacggcatgatcatcgtcggccgccgcccggtgcattacggccccatcgacccgccggtt
gcgcgtgagatgttcattcgcgaagggctggtgcgcggcgatatcaacagccgcgtgcgc
tgcctgaccgccaaccgccagttgctggaacgcctcgacgagctggaggccaagtcgcgc
cgccgcgatattctcgccgacgaggaaaccctgttcggctactacgaggcgcgtatcccg
caggacatctaccaggccgcgagtttcgagagctggtacaagaagggcagcgccgccgac
ccgcaactgctgatcatgcgcgaggaagacgccctggcccgcgatgccaaggaagtcacc
gccgcgcagtacccggacaccttgcgcatcggcgagctgcaactgccgctgagctatcac
ttcgagcccaaccacccgcgtgatggtgtgaccctgcgcgtgccggcgccgctgttgccg
caactgcagcccgagcgtttggaatggctggtgccgggactgttggaagccaagtgcatt
gccctggtgcgcggcctgcccaaggcgctgcgcaagaacttcgtgccggtgccggacttc
gtcggcgcggcgctgggcaagctggtgttcggccagggttcgttgccgcaggctctcggt
caggagttgctgcgcatgactggcgcgcgggtatccgacgaggcctgggcggaagcggct
gaaagcatcgaaaaccacctgaagatgaatatcgaggtggtcgatgcccagggcaagttc
ctcggcgaaggccgcgaccttgccgagctgactgcgcgtttcgccgaagccagccaggct
gcgttggccatcccgcagcagagcgacaagccgaaagcggtggaggccaaggccttcgcc
gaggtggcggagaaggcccagcagaagatcgccgggctttccatgacggtctacccggcc
ttggtggaggaggcaggggtggtcaaggaagggcgcttcccgactcaggccgaggccgac
ttccagcatcgccgtgcgctgcaacgcctgctgctgcaacaactggccgaacaggccaag
ttcctgcgcggcaagctgccggggttgaccgagctgggcctgctgtatcgcgatatcggc
cgtgtcgaggcgctggtcgaggacattctgctggccagcctggatgcctgcatcctcgaa
ggcgaagccacgctgcctcgcgacggcgcggccctggcgcaacttgccgagcgcaagcgt
ggcgactggacggcgcatgccgaacgcatcgctcgccaggtgctggaaatcctcaagttg
caccatggcctgcagaagcgcttcaagggcaagatcgacctggcccaggccatggcgctc
aacgacatcaagcagcagttggccaatctggtctatgccggcttcgtgcgcgagacgccg
ggcgagtggctcaaggaaattccgcgttatctgaaggccatcgagcagcgtctggacaag
gtgggtgcgcaggtgcagcgtgaccgcgtatggacgggcgagctcaccggctactgggaa
cagtacaaggcgcgcactggcaaacatgcccaggaaggcaagcgcgacccgcagctcacg
ctgtatcgctggatgctggaggaataccgcgtgtcgctgttcgcccagcaactggggacg
aagatggcggtgtcggacaagcgcctgagcaagcagtggacgctggttgaaggttga
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integrated database retrieval system
