Pseudomonas sediminis: HNQ25_21760
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Entry
HNQ25_21760 CDS
T07154
Name
(GenBank) sigma 54-interacting transcriptional regulator
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
psej
Pseudomonas sediminis
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
psej03000
]
HNQ25_21760
Transcription factors [BR:
psej03000
]
Prokaryotic type
Helix-turn-helix
Other families
HNQ25_21760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
PAS
PAS_9
AAA_lid_14
Sigma54_activ_2
PAS_4
PAS_8
AAA
AAA_5
PAS_3
AAA_16
Mg_chelatase
AAA_2
bpMoxR
TIP49
AAA_22
GAF
HTH_8
AAA_29
AAA_7
Motif
Other DBs
NCBI-ProteinID:
QNH00887
UniProt:
A0ABX6SH25
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All DBs
Position
4646332..4648263
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AA seq
643 aa
AA seq
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MPDPNAASQLLLQRMQSASLVIDPTCDRILHANPACCAMLGWPQEELLTLRASRLWAHDL
GALVTFTEEVQVRGAAWRDGLGLLRRDGERLEVEIDGSRLEHDGTTLIGLLIQQRRRLDA
LRGLAEAERYQRQGLLEWQGVERIFRQFERQNQLILGAAGEGIYGVNRNGETTFVNPAAE
RILGWRADDLIGHNIHDLIHHHHPDGSTYDGHTCPIYAAFNDGEVHQVADEVFWNKDGKP
IPVDYTSTPLRDDGELVGAVVVFRDISDRLETERRLRQALSEVQQLKQRLELENAYLQEE
IRGEYAQHDLVGRSAAMQQVIHQIELVAPTGANVLITGESGTGKELIARAIHDNSGRSRR
PLIRVNCAAVPRELFESEFFGHIRGAFTGALNDRVGRFELADGGTLFLDEVGEIPLELQS
KLLRVLQEQQLERVGDNRTRQVDVRVIAATNRDLRQEVRAGRFREDLYFRLNVFPIESAP
LRQRPEDIPPLAQHFLGRVCRQLNRPEPSLRLADIQRLQAYSWPGNIRELENLIERAVII
SPGTRLRLDLPSDKGNDAPSQPPVEQEMRIFTQGEQRRQMRENLIAALTACAGRISGKDG
AARLLELKPTTLRSRLESFAIDPRDYRPGRSQSRRYETNQTPR
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcctgatccaaatgccgcgagccaattgctgctgcagcgcatgcagagcgccagcctg
gtcatcgaccctacctgcgaccgtatcctgcatgccaatccagcctgttgcgccatgctc
ggctggccacaggaagagttgctcacactgcgcgccagccgtctctgggcgcatgacctc
ggagcactggtcaccttcaccgaggaagtgcaggtgcgcggcgctgcctggcgcgacggc
ctcgggctgctacgtcgcgatggcgagcgcctggaggtggaaatcgacggcagccggctg
gagcatgacggcaccaccctgatcggcctgctgatccaacagcgccgccgcctcgacgcc
ctgcgcgggctggccgaagccgagcgctaccaacgtcaggggctgctcgaatggcagggc
gtggagcgcatcttccgccagttcgagcggcagaatcagctgatcctcggcgccgctggc
gagggcatttatggcgttaaccgtaatggcgagacgaccttcgtcaacccggcagccgag
cgcattctcggctggcgtgccgacgacctgatcggccacaacattcacgacctgattcac
caccaccatcccgacggcagcacctacgacggccacacctgcccgatctacgcagccttc
aacgacggcgaggtgcatcaggtggccgacgaggtgttctggaacaaggacggcaagccg
atcccggtggattacaccagcacgccgctgcgcgatgacggcgaactggtcggcgccgtg
gtggtgtttcgcgacatcagcgatcgcctggaaaccgagcgccggttgcgccaggctctg
agcgaggtacagcagctcaagcaacgcctggaactggagaatgcctacctgcaggaggaa
atccgcggcgagtacgcccagcacgacctggtcgggcgcagcgccgccatgcagcaggtg
atccaccagatcgaactggtcgctcccaccggcgccaacgtgctgatcaccggcgagtca
ggcaccggcaaggagctgatcgcccgcgccattcacgacaacagcggacgcagccgccgc
ccactgatccgggtgaactgcgcagcggtaccgcgcgaactgttcgagagcgaattcttc
gggcatatccgcggcgccttcaccggcgcgctgaatgaccgcgtcgggcgcttcgaactg
gccgacggcggcacgctgtttctcgatgaggtcggcgaaattcccctggagctgcagagc
aagctattgcgcgtgctgcaggaacagcaactggaacgagtcggcgacaaccgcacccgt
caggtcgacgtgcgcgtgatcgcggccaccaaccgcgacctgcgccaggaagtgcgtgcc
ggccgcttccgtgaagacctgtactttcgcctcaacgtcttccccatcgagtcggcgcca
ctgcgccagcgcccggaagacattccgcccctggcccagcactttctcggccgcgtctgt
cgtcagctcaatcgccctgagccgagcctgcgcctggccgacattcagcgcctgcaagcc
tattcctggccgggcaacattcgtgagctggagaacctgatcgagcgcgcggtgatcatt
tcgcccggcactcggctgcgcctggacttgcccagcgacaagggcaacgacgcgccatcg
cagccacctgtcgaacaggaaatgcggattttcacccagggcgaacaacgccggcagatg
cgggagaacctgatcgcggcgctgacggcctgcgcaggcaggatatcggggaaggacggc
gcggcgcggttgctggagctaaagccaacgaccctgcgctcacgcctggagagcttcgcc
atcgacccgcgcgactaccgaccgggaaggtcgcagtcgcgcaggtacgagacgaatcag
acgccgaggtag
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