Pseudomonas sediminis: HNQ25_22300
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Entry
HNQ25_22300 CDS
T07154
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psej
Pseudomonas sediminis
Pathway
psej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNQ25_22300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psej03019
]
HNQ25_22300
Enzymes [BR:
psej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HNQ25_22300
Messenger RNA biogenesis [BR:
psej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNQ25_22300
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QNH00994
UniProt:
A0ABX6SJH3
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All DBs
Position
4768871..4770769
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AA seq
632 aa
AA seq
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MSFASLGLSEALVRAVESAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDREQRHGPKQPRVLVLTPTRELAAQVHDSFKVYARDLKFVSACIFGGVGMN
PQVQALAKGVDVLVACPGRLLDLANQKAIDLSHVEILVLDEADRMLDMGFIHDVKKVLAK
LPAQRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITQGAWEQVLVFTRTKHGANRLAEYLDKHGLPAAAIHGNKSQNARTKALADFKANQV
RILVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLMGFDASAVEAERPEVREPRQPRNAGQKKQKAEGGGDKPKGERN
NGGRRDKGKDGGKDQKAKPQQQGQGQGQNRRGQQPRNQNRGAAPAVPALPPDRDPEEFLD
DEIDNFGNRADYVPVQNKPQSRGRRSGGGASGNGAAQGQGQRANSNNRQPRSNTGGNPGN
PGKNRRQGGQGGQGRNGGGRGRQADGRITSLDRDELPRAEAAVRNPREKQPIIVHKGSRL
DRFPSAEQLDELSNSTRPRGEKPALLTRNREE
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcctccctcggtctctccgaggctctagtccgtgcggtcgagtccgccggc
tacacccagcccactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgat
ctcatggtggcggcccagacgggtacaggtaagacgggcggtttcgccctgccgatcctc
gagcgcctgtttccgggcggtcatccggatcgcgaacaacgtcacggcccgaaacagccg
cgcgtgctggtgctgacacccactcgcgaactggccgcccaggtgcatgacagcttcaag
gtctatgcccgcgatctgaaattcgtcagcgcctgcattttcggcggcgttggcatgaac
ccgcaggtccaggccctggccaagggcgtcgacgtgctggtggcctgccctggtcgcctg
ctcgacctggccaatcagaaagccatcgacctgtctcacgtggaaattctcgtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaggtgctggccaaa
ctgcccgcacagcgccagaacctgctgttctcggccaccttctccaaggacatcaccgac
ctggccggcaagctgctgcacaaccccgagcgcatcgaggtcacgccgccgaacaccacg
gtcgagcgcatcgaacagcgtgtgttccgtctggctgccagccacaagcgcgccctgctc
gcccacctgatcacccagggtgcctgggaacaggtgctggtgttcacccgcaccaaacac
ggcgccaaccgcctggccgagtacctcgacaagcatggtctgccggctgccgcgatccat
ggcaacaagagccagaacgcgcgcaccaaggccctggccgacttcaaggccaaccaggta
cgcatcctggtggccaccgatatcgccgcacgcggcctggatatcgatcaactgccgcac
gtggtcaacttcgagctgcccaacgtcgaggaagactacgttcaccgcattggccgcact
ggccgtgccggccgcagcggcgaggccatctcgctggtcgctccggacgaagagaagcta
ctgaaaagcatcgagcgcatgaccaagcagaagatccccgacggcgatctgatgggcttc
gacgccagcgccgtggaagcggagcgcccggaagtacgtgagccacgccaaccgcgcaat
gccgggcagaaaaagcagaaagccgaaggcggtggcgataagcccaagggcgagcgcaac
aacggtggccgcagagacaagggcaaggatggcggcaaggatcagaaagccaagccgcag
cagcaaggtcagggccaagggcagaaccgccgaggtcagcaacctcgcaaccagaatcgt
ggcgcagctccggccgttcccgcactgccgccggatcgcgatccggaagagtttctcgac
gacgaaatcgacaatttcggtaaccgtgccgattacgtcccggtgcagaacaagccgcaa
agtcgcggccgccgctcgggcggcggtgcatctggtaatggcgctgctcagggccaaggt
cagagagccaacagcaacaacaggcagccccgcagtaacactggcggtaacccaggcaat
cccggcaagaatcgccgtcaaggtggccagggtggtcaaggccgcaacggcgggggccgc
ggccgacaggcggatggtcgcatcacctcgctggaccgcgacgaactgccacgcgccgaa
gcggccgtgcgcaacccgcgcgaaaagcagccgatcatcgtgcacaagggctcgcgcctg
gatcgtttccccagcgccgagcagctagacgagttgagcaacagcactcgcccacgcggc
gagaagccggcgctgctgacgcgtaatcgcgaagagtaa
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