Pseudomonas sediminis: HNQ25_22525
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Entry
HNQ25_22525 CDS
T07154
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psej
Pseudomonas sediminis
Pathway
psej03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psej00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HNQ25_22525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psej03019
]
HNQ25_22525
03400 DNA repair and recombination proteins [BR:
psej03400
]
HNQ25_22525
Enzymes [BR:
psej01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HNQ25_22525
Messenger RNA biogenesis [BR:
psej03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HNQ25_22525
DNA repair and recombination proteins [BR:
psej03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HNQ25_22525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QNH01037
LinkDB
All DBs
Position
complement(4819837..4821759)
Genome browser
AA seq
640 aa
AA seq
DB search
MSTLKRVFGFNQLRPGQETVISAVLAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVISP
LLALMQDQLAFLHAHGIAAASIDSAQSREQAAEVMNRARSGELKILMISVERLKNERFRN
FIAQVPISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFGINQVLLLTATATPKVIADMR
EKFAIAEADVVTTGFYRPNLNLLVEPVPGGAKQQRLQQWLAPRRGQASIVYVTQQKTAEQ
VAEHLARDGLAVSAYHAGMAHDVRESIQRRFMAGELECIVATIAFGMGIDKRDIRNVVHF
DLPKSVENYSQEIGRAGRDGQASDCLVLASRDGLSVLENFVFGDTPELSGIRAVLDDLRA
VGTGGQWELMLGQLSELSNIRALPLKTLLVQLELRGIIAPRYAYFAEYRFKLLLEDDVLL
AKFEGERRQFVEAILASSRRARTWSTLDFDVLYRDHGAERARVVKALDYFQERGWLELES
KQMTEVYAVLDGDFDVAALASDLHAHFRAHEASEIARIQAMLGLFESRECLSRRLALYFG
DEQAPEHCGHCSVCRGQVATLPQPPELPPLSGRDAEALCAAFIEKHQQHAGYRPSHECLT
RFLCGVTTPLLTKLKARQLAGFAALEDYPYAEVREWLTGL
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccctcaaacgtgtcttcggtttcaatcaactgcgtcccggccaggaaacggtg
atcagcgctgtgcttgccggtcgttcggcggcggcgatctttcctaccggttcgggcaag
tcgctgtgctatcagttgccggccttgcatctgccacacctgaccctggtgatttcgccg
ctgctggcgttgatgcaggatcagttggcgttcctgcatgcccatggcattgccgcggcc
agtatcgattcggcgcagagccgcgagcaggccgccgaggtgatgaatcgcgcgcgcagc
ggcgagctgaagatcctgatgatctcggtggagcgcctgaagaacgagcgttttcgcaat
ttcatcgctcaggtgccgatctccctgctggtcgtagacgaggcgcactgcatctccgag
tggggccacaacttccgcccggactacctcaagctgcccgactatcagcgccagttcggc
atcaaccaggtgctgctgctgaccgccacggcgacgcccaaggtgatcgccgatatgcgc
gagaaattcgccatcgccgaggcggacgtggtcaccaccggtttctaccggcccaacctc
aatctgctggtcgagcccgtgcccggaggtgccaagcagcagcgtctgcagcaatggctg
gcgccgcgacgcggccaggcgagcatcgtctacgtcacccagcagaagactgccgagcag
gtcgccgagcatctggcgcgcgacggcctggcggtcagcgcttaccacgcgggtatggcc
catgatgtacgtgagtcgatccagcgccgtttcatggctggcgagctggagtgcatcgtc
gccaccatcgccttcggcatgggcatcgacaagcgtgacatccgcaacgtggtgcacttc
gacctgcccaagtcggtggagaactacagccaggaaatcggccgtgccgggcgtgacggc
caggcctcggactgcctggtgctggccagtcgcgatggcctcagcgtgttggaaaatttc
gtttttggcgatacgcccgagctcagcggtatccgcgccgtgctcgatgatttgcgcgcg
gtcggcacgggcgggcagtgggagctgatgctcgggcagctgtcggagctgagcaatatt
cgcgcgttgccactcaagaccctgctggtgcagctggaactgcgcggcatcatcgccccg
cgttatgcctacttcgccgagtaccgcttcaagctgctgctggaagatgacgtgctgctg
gccaagttcgagggcgagcgccgccagttcgtcgaggcgattcttgccagctcacggcgc
gcgcgaacctggagcacgctggatttcgacgtgctgtatcgcgaccacggcgccgaacgg
gcgcgggtggtcaaggcgctggattactttcaggaaagaggctggctggagctggaaagc
aagcagatgaccgaggtctacgccgtgctcgatggcgacttcgatgtggcagccctggcc
agcgatctgcacgcgcacttccgcgcccacgaggccagcgagatcgcgcgtatccaggcg
atgctcggtctgttcgagagccgcgaatgcctgagccggcgcctggcgttgtactttggt
gacgaacaagcgcccgagcattgcggacattgttcggtgtgccgggggcaggtcgcgacc
ttgccgcagcctccggaactaccgcccttgagcggacgtgatgccgaggcgctgtgcgcc
gccttcatcgagaagcaccagcagcacgccggctacaggccgagccacgaatgtctgacg
cgttttctctgtggcgtcaccacgcccctgctcaccaagctcaaggcacgtcagctggct
ggcttcgccgcgctggaggattatccctacgccgaggtgcgtgagtggttgacgggtctg
tag
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