Paraoerskovia sediminicola: GCM125_15120
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Entry
GCM125_15120 CDS
T09128
Name
(GenBank) hypothetical protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psek
Paraoerskovia sediminicola
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psek03019
]
GCM125_15120
Enzymes [BR:
psek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GCM125_15120
Messenger RNA biogenesis [BR:
psek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GCM125_15120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
PG_binding_1
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_19
NACHT
T2SSE
nSTAND3
Zeta_toxin
Motif
Other DBs
NCBI-ProteinID:
BDZ42213
LinkDB
All DBs
Position
complement(1575034..1581051)
Genome browser
AA seq
2005 aa
AA seq
DB search
MTTEKHPDANPDRGETPREGAPRRRGGRNRRGRGRGTVAANGRGDSPRRPPRVNPAQLAR
EAEARRAVVVPEIVYPEQLPVSARRDDIAAAIRDHQVVIVAGETGSGKTTQLPKIALELG
RGRAGQIGHTQPRRIAARAVADRIAEEINGPGATPVGEIVGYQVRFTDQSSERTLVKVMT
DGILLAQIQRDPQLLAYDTLIIDEAHERSLNIDFLLGYLTRLLPQRPDLKVIITSATIDS
ERFARHFAPGGPLPPLEPEEVMGATGAVADAGDRTSSDLAGEDPTGPPTAPVIEVTGRTF
PVEIRYRPLAGERSGDDRDLVTGITDAAKELMAEGPGDILVFLSGEREIHDAQDALEGWL
GDRARDQKRPDHVEILPLYSRLSAAEQHRVFQAHRSRRIVLATNVAETSLTVPGIHYVID
PGTARISRYSKATKVQRLPIEPVARASANQRSGRSGRVADGIAIRLYSEEDFEARPAFTE
PEILRTSLASVLLQMISVGVVSTPDDVARFPFVEPPDTRAIRDGVQLLAELGALEATRDG
RQRLTETGRVLAQLPMDPRLARMIWEGSKQGVAREVAIVAAALSIQDPRERPAEVRAQAD
QAHARFADGKSDFLTYLNLWEYVRTQQRSLGSSAFRRLCKAEFINFLRVREWQDVVAQLR
EMGRPLGIYLSHTQQPHPGASRRPAGRGDAKDVKEARANRSPSAGGDGADSPSTPLPGDD
PHDLKHRWDDDAIHRSILAGLLSQIGMQETNELKASSFAHLKGPAREQAMRRAKKQARNE
YLGARGARFAIFPGSPLSKKPPAWVMAGELVETSRLWGRDVARIQPEWAESLAGPLAKRT
YSDPHWSTKRGAAMAVEKVLLYGVPIVSDRKVLFGSVDPEGAREMFLRHALVQGEWTTHH
PFFAENQRLLEEAEELEARSRRRGLVVDDDALFDFYDERVPDSVVSAAHFDKWWRTAKRE
SPDLLTFTLEQLVPDAEQVDTSQFPEAWEQGDLTLPLTYQFQPGTDADGVTVHIPLTVLN
RVVPDGFDWMVPGLLDELATATIRSLPKPVRVQLVPAPDVARDVVGWLRANTPDWADMTR
AGDMAEPFRAAFTRAVRELRDVVVPDEAWDGAAERLPSHLRMTFRVTDTRGSNGDTIALD
ESTDLISLQRRLAPQAEAAVRSAVRGAVGAALAEAAASSSSAGTVAEGLGLAGGSPTAGR
RRSGKPASTSFDSSTPSGPGAPGRAGDAKGVEEVRAHREPGGRGDGTDSPSTAARPGAGP
DHVVVAEKVGLRSWPEGLDGGVLPDEVSTDLGGGTVVRGFPALVEEVDAKGAASVALRVL
ADARLREMRHAQGVRRLLLGECALQSGRITSRWNGTQALTLAASPYRNTEDLVADIQLAA
VISLVPAAGSIRDADAYARAKALVKKRLEDEVHTVVGHVVAALTASRTLDGEVRSANSLA
LLNTLTDVRDQVAGLVGVGFISATPPDRLRHLTRYVRAASYRLEKAAANPNRDAELAWRV
HDVEDAYAKARAAYAAGQPDAARSAELAEVRWMLEELRVSLFAQQLGTDGPVSEKRIRKI
LGDSHRPTGRNGGGRDAGGRCGGACRTEDVGSLRVATRGLPDVSGRPTPYVRSHEHPHPL
PSPERQVDRRRLLRPRAPLRHQREHGPADRRPVMPSPRPAVHRLRGPVDRHAQGRLTSRP
GRPRAAAGTGVPGGFRRTTSRGGRRTLPTSETDRRSVTTRSEERAMNVEPWSTIGPGSSG
VVVQGIQHHLRARGGTLAADGSYGPITAAAVTTFQSSAGLTADGVVGPATWPNLVVPARI
GDTGEAVRAVQEFGLVPSPGVPPLVVDGSYGPITRDRVRFFQESWGLQLDGAAGRETWSF
LSTSVPGPRPWPLVKPGAQQATNWRVLAAQHLLRHHGASIVADGSFGPLSTEAARQFQQD
LRARFVSGTIGQLDWPELIVTVRQGDHGEAVRAAQTLLPGGLTVDGSFGPLTDAAVREFQ
TMFAPPVDGVVGPITWHTLTLRIFD
NT seq
6018 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccgagaagcaccccgacgcgaaccctgaccggggcgagaccccgcgcgagggt
gcgccgcgccgtcggggagggcgcaaccgccgaggccgcgggcgaggaaccgtcgcggcg
aatgggcgcggcgacagcccccgcaggcccccgcgggtcaatcccgcgcagctcgcccgc
gaagcggaggcgcgccgcgccgtggtggtccccgagatcgtgtacccggagcagctgccc
gtctcggcgcgccgcgacgacatcgccgcggcgatccgtgaccaccaggtcgtgatcgtc
gccggcgagaccggctccgggaagacgacccagctgccgaagatcgcgctcgagctcggc
cgaggacgcgcgggtcagatcggccacacccagccccgacgcatcgcggcccgcgcggtc
gccgaccggatcgccgaggagatcaacggccccggggcgacgccggtcggggagatcgtc
ggctaccaggtccggttcaccgaccagtcgtcggagcgcaccctcgtcaaggtcatgacc
gacgggatcctgctcgcgcagatccagcgcgacccgcagctgctcgcctacgacaccctc
atcatcgacgaggcgcacgagcgctcgctcaacatcgacttcctcctcgggtacctgacg
cggctcctgccccagcgccctgacctcaaggtgatcatcacctcggcgacgatcgactcc
gagcggttcgcccggcacttcgcgcccggtgggccgctgccgccgctcgagcccgaggag
gtcatgggcgccacaggtgccgtggcggacgcaggcgaccggacgtcgtccgacctcgcc
ggcgaggacccgacgggcccgccgaccgcccccgtcatcgaggtgaccgggcggacgttc
cccgtcgagatccgctaccgcccgctcgcgggcgagcggtccggcgacgaccgcgacctc
gtcaccggcatcacggacgccgcgaaggagctcatggccgaggggccgggcgacatcctc
gtgttcctgtcgggcgaacgggagatccacgacgcccaggacgcgctcgagggctggctc
ggggaccgcgcccgcgaccagaagcggcccgaccacgtcgagatcctgccgctgtactca
cggctctcggccgcggagcagcaccgcgtgttccaggcgcaccgctcgcggcgcatcgtg
ctcgccaccaacgtcgccgagacgtcgctgaccgtccccggcatccactacgtgatcgac
cccgggaccgcccgcatctcgcgctactccaaggcgacgaaggtgcagcggctgccgatc
gagccggtcgcgcgggcgagcgccaaccagcgttcgggccgctccggtcgcgtcgcggac
ggcatcgcgatccggctgtactccgaggaggacttcgaggcgcgcccggccttcaccgag
cccgagatcctgcggacctcgctcgcgtcggtcctgctgcagatgatctcggtgggggtc
gtgtcgacgccggacgacgtcgcgcgcttcccgttcgtcgagccgcccgacacgcgggcc
atccgcgacggcgtgcagctgctcgcggagctgggggcgctcgaggcgacccgggacggg
cgtcagcggctcaccgagacgggccgggtgctcgcgcagctgccgatggacccgcgcctc
gcacggatgatctgggagggctcgaagcagggcgtcgcccgcgaggtcgcgatcgtcgcg
gcggctctctccatccaggacccgcgcgagcggcccgccgaggtccgcgcccaagcagat
caggcgcacgcccggttcgccgacgggaagtccgacttcctcacctacctgaacctgtgg
gagtacgtccggacgcagcaacgatccctggggtcgtcggcgttccgccgcctgtgcaag
gcggagttcatcaacttcctgcgcgtgcgcgagtggcaggacgtcgtcgcgcagctccgc
gagatgggcaggccgctgggcatctacctctcccacacgcagcagccacaccccggtgcg
agccggcggcccgccgggcgcggagacgcgaaggacgtcaaggaggcgcgcgcgaacagg
agcccgagcgcaggaggcgacggcgccgacagtccgagcactcctctcccgggcgacgac
ccacacgacctcaagcaccggtgggacgacgacgcgatccaccggtcgatcctcgcgggg
ctcctctcgcagatcggcatgcaggagaccaacgagctcaaggcgtcgtcgttcgcgcac
ctcaaggggcctgcgcgcgagcaggcgatgcggcgcgcgaagaagcaggcacgcaacgag
tacctcggggcgcgcggcgcccggttcgcgatcttcccggggtcgccgctgtcgaagaag
ccgccggcctgggtgatggccggcgagctcgtcgagacgtcgcggctgtggggacgcgac
gtcgcccgcatccaacccgagtgggccgagtcgctcgccgggccgctcgcgaagcgcacg
tactccgacccgcactggtcgacgaagcggggagccgcgatggccgtcgagaaggtgctg
ctctacggcgtcccgatcgtcagcgaccgcaaggtcctgttcgggtccgtcgaccccgag
ggcgcccgagagatgttcctgcggcacgccctggtccagggcgagtggacgacgcaccat
ccgttcttcgccgagaaccagcggctgctcgaggaggcagaggagctcgaggcacgctcg
cggcgccgcggcctcgtcgtcgacgacgacgcgctgttcgacttctacgacgagcgcgtc
cccgactcggtcgtgtcggcggcgcacttcgacaagtggtggcggacggcgaagcgcgag
tcccccgacctgctcaccttcacgctcgaacagctcgtgcccgacgcggagcaggtcgac
acgtcccagttcccggaggcgtgggagcagggcgacctgacgctgccgctgacctaccag
ttccagcccggtacagacgcggacggcgtgactgtacacatacccctgaccgtgctgaac
cgggtcgtccccgacgggttcgactggatggtgcccgggctcctcgacgagctcgcgacc
gcgacgatccgttcactccccaagccggtgcgcgtccagctggtccccgcgcccgacgtc
gcacgggacgtcgtcggctggcttcgggcgaacacgccggactgggccgacatgacacgg
gccggcgacatggcggagcccttccgggcggcgttcacgcgagccgtccgcgagctgcgg
gacgtcgtcgtccccgacgaggcctgggacggcgccgccgagcggctgccctcgcacctg
cgcatgaccttccgcgtgaccgacacccgcggctcgaacggcgacacgatcgcgctcgac
gagtcgaccgacctcatctcgctccagcgccggctcgcgccgcaggcggaggcggcggtg
cggtcggccgtccgcggggctgtcggggctgcgctggctgaggcggccgcgtcgtcgagc
tcggccgggaccgtcgccgagggtctcggactggccggcgggtcgccgaccgcaggccgg
cgccggtcgggcaagcctgcctcgacgtccttcgactcctcgacgccgtccggccccgga
gcgccgggccgagcgggagatgcgaagggcgtcgaggaggtgcgcgcgcaccgggagccg
ggaggccgaggtgacggcaccgacagcccgagcactgccgcccggcccggcgccggcccc
gaccacgtggtggtcgccgagaaggtcgggctgcggtcgtggcccgagggtctcgacggc
ggggtgctgcccgacgaggtgagcaccgacctcggcggcgggaccgtggtccgggggttc
cctgctctcgtggaggaggtcgacgcgaagggcgcggcgagcgtcgctctccgggtgctg
gccgacgcgcgactgcgcgagatgcggcacgcgcagggtgtccggcggctcctgctcggc
gagtgcgcactgcagagcggccgcatcacgtcgcgctggaacggcacgcaggccctgacg
ctcgcggcgagcccgtaccggaacaccgaagacctcgtcgccgacatccagctcgccgcc
gtcatctcccttgtgcccgctgcggggtcgatccgcgacgccgacgcgtacgcccgggcc
aaggccctcgtgaagaagcggctcgaggacgaagtccataccgtcgtcggacacgtcgtg
gctgcgctgacggcgagccggaccctcgacggcgaggtacggtccgcgaactcgctggca
ctgctgaacacgctgacggacgtgcgcgaccaggtggccgggctcgtgggcgtggggttc
atcagcgcgaccccgcccgaccggctgcggcacctgacccgctacgtgcgggcggcgtcc
taccgcttggagaaggcggcggcgaacccgaaccgcgacgccgagctcgcgtggcgggtg
cacgacgtcgaggacgcgtatgcgaaggctcgcgcggcgtacgcggccgggcagcccgac
gccgctcggagcgccgagctggccgaggtgcgctggatgctcgaggagctgcgggtctcg
ctgttcgctcagcagctcggcacggacgggccggtcagcgagaagcggatccgcaagatc
ctcggggatagccaccggcccaccggccgaaacggcggaggccgagacgccggaggccga
tgcggcggagcctgccgcacggaggacgtcgggagcctcagggtcgcaaccagggggctc
cctgatgtatccgggcgcccgacgccgtacgttcggtcccatgagcacccccaccctctc
ccgtccccagaacgacaagtggatcgccggcgtctgctccggcctcgggcgccgcttcgg
catcagcgcgaacatggtccggctgatcgccgtcctgtcatgccttctccccggcccgca
gttcatcgcctacgtggtcctgtggatcgtcatgcccaaggacgcctgacctcgcggccg
gggcggccgcgagcggcggccgggaccggcgtcccgggtggattccggcggacgacgtcc
cgcggcggacggcgcaccctccctacgagcgagaccgaccgcaggtcggtgacgactcgc
agcgaggagagagcgatgaacgtcgaaccgtggagcacgatcgggccggggtcctccggt
gtcgtcgtccagggcatccagcaccacctgcgcgcccgcgggggcaccctcgcggccgac
ggctcgtacgggccgatcaccgccgccgccgtcacgacgttccagtcgtcggcgggcctg
accgcggacggcgtggtcggccccgccacgtggccgaacctcgtcgtgcccgcccggatc
ggggacaccggcgaggccgtgcgcgccgtccaggagttcggcctggtcccgtcgccgggc
gtgccgccgctcgtcgtcgacgggtcctacgggccgatcacccgggatcgcgtgcggttc
ttccaggagtcctggggtctgcagctcgacggcgccgccggccgtgagacgtggtcgttc
ctcagcacgtcggtccccgggccgcgcccgtggccgctcgtgaagcccggcgcgcagcag
gcgaccaactggcgggtcctggccgcacagcacctgctgcgccaccacggcgcgtcgatc
gtcgcggacgggtcgttcgggccgctgagcaccgaggccgcacggcagttccagcaggac
ctgcgggcccgcttcgtgagcggcacgataggacagctcgactggcccgagctgatcgtg
acggtccgccagggcgaccacggcgaggcggtgcgcgccgcgcagacgctgctccccggt
gggctcacggtcgacgggtcgttcggcccgctcacggacgccgccgtgcgcgagttccag
acgatgttcgcccctccggtcgacggcgtggtcgggccgatcacctggcacaccctcacg
ctgcgcatcttcgactga
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