Paraoerskovia sediminicola: GCM125_19590
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Entry
GCM125_19590 CDS
T09128
Name
(GenBank) helicase
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
psek
Paraoerskovia sediminicola
Pathway
psek03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
GCM125_19590
09124 Replication and repair
03420 Nucleotide excision repair
GCM125_19590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psek03021
]
GCM125_19590
03400 DNA repair and recombination proteins [BR:
psek03400
]
GCM125_19590
Enzymes [BR:
psek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCM125_19590
Transcription machinery [BR:
psek03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
GCM125_19590
DNA repair and recombination proteins [BR:
psek03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
GCM125_19590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDZ42660
LinkDB
All DBs
Position
complement(2046301..2047983)
Genome browser
AA seq
560 aa
AA seq
DB search
MADGPLIVQSDKTLLLEVDHELARDARRAIAPFAELERAPEHVHTYRLTPLGLWNARAAG
HDAEQVVAALMEYSRYPVPHALLVDVAETMARYGRLQLIQDPAHGLVLHALDRAVLAEVL
KSRRTAGLVGEKIDDLTVIVHPSERGHLKQVLVKLGWPAEDLAGYVDGEKHPIALTTETV
TTSDDGAQVRKPWSVRPYQEQAIEGFWHGGSGVVVLPCGAGKTIVGAGAMARSGTTTLIL
VTNTVSARQWRDELLRRTDLTEDEIGEYSGARKEIKPVTIATYQVLTTRRKGVYTHLELL
DARDWGLVLYDEVHLLPAPIFRMTADLQARRRLGLTATLVREDGREDEVFSLIGPKRYDA
PWKDIEAQGYIAPADCVEVRLTLPESERMVYATAEPEDRYRLAASATGKNRVVERIVAQH
PEDQVLVIGQYIDQLEELSEHLDAPLITGATTVRERQRLYDAFRSGEINHLVVSKVANFS
IDLPEASVAIQVSGSFGSRQEEAQRLGRIMRPKADGRTAHFYAVVARDTVDQDFAAHRQR
FLAEQGYAYRIVDAEDLNEA
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggccgacggcccgctgatcgtgcagagcgacaagaccctcctgctcgaggtcgaccac
gagctcgcccgcgacgcccgccgcgcgatcgcgccgttcgccgagctcgagcgcgccccc
gagcacgtccacacctaccggctcacaccgctgggcctgtggaacgcgcgcgccgccggg
cacgacgccgagcaggtcgtcgccgccctgatggagtacagccgctaccccgtgccgcac
gcgctgctggtcgacgtcgccgagaccatggcgcgctacgggcggctgcagctgatccag
gacccggcgcacgggctcgtcctgcacgcgctcgaccgcgccgtgctcgccgaggtgctc
aagtcgcgccgcaccgcaggcctcgtgggcgagaagatcgacgacctcaccgtgatcgtc
caccccagcgaacgcggccacctcaagcaggtcctcgtcaagctcggctggcccgccgag
gacctcgccgggtacgtcgacggcgagaagcacccgatcgcactcacgaccgagacggtc
acgacgtcggacgacggcgcgcaggtccgcaagccgtggtccgtgcgcccgtaccaggag
caggcgatcgaggggttctggcacggcggctccggcgtcgtcgtcctgccctgcggcgcc
ggcaagaccatcgtcggggcgggcgcgatggcacgctcgggcaccacgaccctgatcctc
gtgaccaacaccgtcagcgcccggcagtggcgcgacgagctgctgcgccgcaccgacctg
accgaggacgagatcggcgagtactccggcgcccgcaaggagatcaagcccgtcacgatc
gcgacctaccaggtcctcacgacccgacggaagggcgtctacacccacctcgagctgctc
gacgcccgcgactggggcctcgtgctctacgacgaggtccacctgctcccggcaccgatc
ttccgtatgaccgccgacctccaggcccgccgcaggctcggtctgacggcgaccctcgtc
cgggaggacggccgcgaggacgaggtgttctcgctgatcggacccaagcggtacgacgcc
ccgtggaaggacatcgaggcgcagggctacatcgcgcccgccgactgcgtcgaggtgcgc
ctgaccctccccgagtcggagcgcatggtctacgcgaccgcagaacccgaggaccgctac
cggctcgccgcgagcgccaccggcaagaaccgggtggtcgagcgcatcgtcgcccagcac
cccgaggaccaggtgctcgtgatcgggcagtacatcgaccagctcgaggagctcagcgag
cacctcgacgcgccgctgatcaccggcgcgacgacggtccgcgaacggcagcgcctctac
gacgcgttccgctcgggcgagatcaaccacctcgtcgtgtcgaaggtcgcgaacttctcg
atcgacctgcccgaggcgtccgtggcgatccaggtctccggctcgttcggctcgcggcag
gaggaggcgcagcgcctcggccggatcatgcgccccaaggccgacggccgtacggcacac
ttctacgcggtggtcgcccgggacacggtcgaccaggacttcgccgcccaccggcagcgg
ttcctggccgagcagggctacgcctaccggatcgtcgacgcggaggacctgaacgaggca
tga
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