Paraoerskovia sediminicola: GCM125_23300
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Entry
GCM125_23300 CDS
T09128
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
psek
Paraoerskovia sediminicola
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psek03400
]
GCM125_23300 (phrB)
Enzymes [BR:
psek01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
GCM125_23300 (phrB)
DNA repair and recombination proteins [BR:
psek03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
GCM125_23300 (phrB)
Prokaryotic type
GCM125_23300 (phrB)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Usp
Motif
Other DBs
NCBI-ProteinID:
BDZ43031
LinkDB
All DBs
Position
complement(2448615..2450111)
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AA seq
498 aa
AA seq
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MRSTPSSLLMGKLWHQCPAAATGTANYRGAVPTSICWFRRDLRLADHPALVAAVEAARAD
GSDVVPLYVIDPALWRTAGANRLAYLAASLRALDRSVGGRLVVRHGDAVDVVPAVAREVG
AREVHVSASHEPYGRRRDRATESALAADGASLRSIGSPYAVSPGRVRKADGEPYQVFTPF
RGAWLDHGWRDPAPHPRSVPWATLPSDGVPDAPETGADLPEAGEAAARARWREFLDDGLA
GYASGRDLPAHDDTSRLSVHLRWGEIHPRTLLADLAEVGRSAGRGSGAPSSDDVATFRSQ
LAWRDFHADVLHHHPSATARSLRAVLPDDAWATGTDEEERLAVWAAGRTGYPLVDAGMRQ
LVATGWMHNRVRMVVASFLVKDLHVRWQRGAEHFMAHLVDGDIAQNQLNWQWVAGTGRDA
APYFRVFNPVTQGLRFDPDGEYVRRWVPELRHLDGTAAHEPWKVGPSLFASDDSYPERVV
DHAVERRATLDDLHRGRG
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
gtgcggtccacgccgtcgtcgctgctcatggggaaactctggcaccagtgccccgctgcg
gcgaccggcacggcgaactaccgtggcgccgtgccgacgtcgatctgctggttccgccgc
gacctgcgcctcgcggaccaccccgcgctggtcgccgcggtcgaggccgcgcgcgccgac
ggctccgacgtcgtcccgctctacgtgatcgaccccgccctctggcgcacggccggggcg
aaccggctggcctatctcgcggcgagcctgcgcgcgctggaccggtccgtgggaggtcgc
ctcgtcgtccggcacggggacgcggtcgacgtggtcccggccgtcgcccgggaggtcggg
gcgcgcgaggtccacgtctccgcgagccacgaaccgtacgggcgacgtcgggaccgcgcc
acggagagcgccctcgccgcggacggcgcgtccctgcggtccatcggctcgccgtacgcg
gtctcccccggccgcgtccgcaaggcggacggcgagccctaccaggtcttcacgccgttc
cgcggcgcgtggctcgaccacgggtggcgggacccggccccgcacccgcgttcggtcccg
tgggcgacgctgccgtcggacggcgtcccggacgctcccgagacgggtgcggacctgccc
gaggcaggtgaggcggcggcccgcgcccggtggcgggagttcctcgacgacggtctcgcc
ggctacgcgagcggccgtgacctccccgcccacgacgacacctcgcgcctgtcggtccac
ctgcggtggggcgagatccacccgcggacgctgctcgccgacctcgcggaggtcgggcgg
tcggcgggccgcgggtcgggcgcgccgtcgtcggacgacgtagcgacgtttcgctcccag
ctcgcctggcgcgacttccacgccgacgtgctgcaccaccacccgtcggcgaccgcgcgc
tcgctgcgtgcggtgctgcccgacgacgcgtgggcgaccggcacggacgaggaggagcgg
ctcgcggtctgggccgcggggcggaccggctacccgctcgtggacgccggcatgcggcag
ctcgtcgcgacgggctggatgcacaaccgggtccgcatggtcgtcgcgtcgttcctcgtg
aaggacctgcacgtgcgctggcagcgcggcgccgagcacttcatggcgcacctcgtggac
ggcgacatcgcccagaaccagctgaactggcagtgggtcgccgggaccgggcgggacgcc
gcgccctacttccgggtcttcaaccccgtcacgcagggtctgcggttcgacccggacggc
gagtacgtgcggcgctgggtgcccgagctgcggcacctagacggcaccgcggcccacgag
ccgtggaaggtcgggccgagcctcttcgcgagcgacgactcgtacccggagcgggtcgtc
gaccacgcggtcgagcgccgagcgacgctcgacgacctgcaccgcggacgcggctga
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