Paraoerskovia sediminicola: GCM125_26430
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Entry
GCM125_26430 CDS
T09128
Symbol
hrdB
Name
(GenBank) RNA polymerase principal sigma factor HrdB
KO
K03086
RNA polymerase primary sigma factor
Organism
psek
Paraoerskovia sediminicola
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
GCM125_26430 (hrdB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psek03021
]
GCM125_26430 (hrdB)
Transcription machinery [BR:
psek03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GCM125_26430 (hrdB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF4589
Motif
Other DBs
NCBI-ProteinID:
BDZ43344
UniProt:
A0ABM8G5F2
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All DBs
Position
2769751..2771367
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AA seq
538 aa
AA seq
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MAPIFSSSTTLPREFEHPALQALLTKGAQDGRIDASTFRAACESADVQGAKRLGAVYRAF
AAQGIEVDIASAGAVAAAESTSTATRATASVSDVDEATKAKRSAAAKKAAATRAAKKAAA
GAEAAGADVTKAPAAGADAEEPAAKKAAGKKPAAKKAAGGRPARKPAGPRVIEPDGVPEE
DPVEAPKKSSAPQDESKGFVVSDADEDDAPVQQVVTAGATADPVKDYLKQIGKVALLNAE
QEVDLAKRIEAGLFAEERLGQREGAAKLSPEEKAVADRKLTREERKEMRDLEWIAHDGRR
AKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWW
IRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKV
VEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAVVPADAVSFTLLQEQLHQVLDTLSER
EAGVVSMRFGLQDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcccatcttttcatcgtccaccacgctcccgcgcgagttcgagcaccctgccctg
caggccctgctgaccaagggcgcgcaggacggtcgtatcgacgcgtccacgttccgcgcc
gcgtgcgagtccgccgacgtccagggcgcgaagcggctcggcgcggtctaccgggcgttc
gctgcgcagggcatcgaggtcgacatcgcgtccgccggggccgtggccgctgcggagtcg
acgagcaccgccacgcgcgcgacggcgtctgtctccgacgtcgacgaggccaccaaggcc
aagcgcagcgccgccgcgaagaaggccgcagcgacgcgggcagccaagaaggctgccgcc
ggggccgaggctgccggcgccgacgtcaccaaggcccccgcagcgggcgccgacgcggag
gagcctgccgcgaagaaggccgcgggcaagaagcccgccgccaagaaggccgccggcggt
cgtcccgcgcgcaagcccgctggtccccgtgtgatcgagcccgacggtgtcccggaggag
gacccggtcgaggcaccgaagaagtcttccgctccgcaggacgagagcaagggcttcgtc
gtctcggacgccgacgaggacgatgcgcccgtgcagcaggttgtcaccgcgggggctacg
gccgacccggtgaaggactacctgaagcagatcggcaaggtcgcgctgctgaacgccgag
caggaggtcgacctcgcgaagcggatcgaggccggcctgttcgccgaggagcgcctcggt
cagcgtgagggtgccgcgaagctctctccggaggagaaggcggtcgccgaccgcaagctc
acccgtgaggagcgcaaggagatgcgcgacctcgagtggatcgcgcacgacggccgccgc
gcgaagaaccacctcctcgaggcgaacctgcgactggtggtctcgctcgcgaagcgctac
acgggtcgcggcatgctgttcctggacctgatccaggagggcaacctcggtctgatccgc
gcggtcgagaagttcgactacaccaagggctacaagttctcgacgtacgcgacctggtgg
atccggcaggcgatcacccgtgccatggccgaccaggcgcgcacgatccgcatcccggtg
cacatggtcgaggtcatcaacaagctcgcccgcgtgcagcgccagatgctccaggacctg
ggccgcgagcccaccccggaggagctcgccaaggagctcgacatgacgcccgagaaggtc
gtcgaggtccagaagtacggccgcgagcccatctcgctgcacaccccgctcggcgaggac
ggggacagcgagttcggtgacctcatcgaggactccgaggcggtcgtccccgccgacgcg
gtgagcttcacgctcctgcaggagcagctccaccaggtcctcgacacgctctcggagcgc
gaggccggcgtggtgtccatgcgcttcggtctgcaggacgggcagcccaagacgctcgac
gagatcggcaaggtctacggcgtgacccgcgagcggatccgtcagatcgagtccaagacg
atgtccaagctgcgccacccgagccggtcccaggtcctgcgggactacctcgactga
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