Paraoerskovia sediminicola: GCM125_26480
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Entry
GCM125_26480 CDS
T09128
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing)
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
psek
Paraoerskovia sediminicola
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psek03032
]
GCM125_26480
03400 DNA repair and recombination proteins [BR:
psek03400
]
GCM125_26480
Enzymes [BR:
psek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
GCM125_26480
DNA replication proteins [BR:
psek03032
]
Prokaryotic type
DNA Topoisomerases
GCM125_26480
DNA repair and recombination proteins [BR:
psek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GCM125_26480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
BDZ43349
LinkDB
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Position
2774754..2776883
Genome browser
AA seq
709 aa
AA seq
DB search
MTTTAADSSYNARHLSVLEGLEAVRKRPGMYIGSTDSRGLMHCLWEIIDNSVDEALAGNC
EDIRIVLHADTSVTVEDDGRGIPVDVEPKTGLTGVEVVFTKLHAGGKFGGGSYTASGGLH
GVGASVVNALSARLDVDVDRGGKTHRMTFHRGEPGRFDDPSSGPGPESPFSPFVTGSELS
VVGKVKRGVTGTRVRYWADRQIFPKNAVFSYDELVTRVRQTTFLVPGLRITVRDERGLPG
TPAEDGPVEESFVHSGGTVDFAEFLAPDAPVTGTWHLIGSGSFTETVPVLDSKGHMTPQP
VDRDCEVDVALRWGTGYATELRTFVNIIATPKGGSHQSGFEAGLLKVVRKAVETNARKLK
VSTKDGSERIDKEDVLAGLTAVVTVRLAEPQFEGQTKEVLGTAPVRGIMARVVEKELAAR
LNATTRDGKTQAALLLDKVVAEMRARVTARKQKEISRRKNALESSSLPAKLADCRSNDVA
RSELFIVEGDSALGTAKLARSSDFQALLPIRGKILNVQKASLSDMLRNAECAAIIQVIGA
GSGRSFDLEASRYGKIVLMTDADVDGAHIRTLLLTLFFRYMRPLVDAGRVFAAVPPLHRV
EVSATGRKKAEYIYTYSEAELAATLKKLDRAGRRYKDDIQRYKGLGEMDADQLAETTMDP
RHRTLRRVTADHAESAERVFELLMGSDVPPRKEFIVAGAHEIDRSKIDT
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
gtgacgaccaccgccgctgactcgagctacaacgcccgccatctctcggttctcgaaggt
ctcgaagcggtgcgcaagcgccccggcatgtacatcgggtcgaccgactcccgcggcctc
atgcactgcctgtgggagatcatcgacaactcggtcgacgaggcgctcgcgggcaactgc
gaggacatccgcatcgtcctgcacgccgacacgtcggtcaccgtcgaggacgacgggcgt
ggcatcccggtggacgttgagcccaagaccggtttgacaggcgtcgaggtcgtcttcacg
aagctgcacgccggcggcaagttcggcggtggttcgtacaccgcgagcggcggcctgcac
ggtgtgggtgcgtcggtggtcaacgcgctgtccgcccggctcgacgtggacgtcgaccgc
ggcggcaagacgcaccgcatgacgttccaccgcggcgagccggggcgcttcgacgacccg
agctcgggccccggtcccgagtcgcccttctcgccgttcgtcaccggctccgagctctcg
gtcgtgggcaaggtcaagcgcggtgtgaccgggacccgcgtgcgctactgggcggaccgg
cagatcttcccgaagaacgcggtcttctcgtacgacgagctggtgacccgggtgcgtcag
acgacgttcctcgtcccgggccttcgcatcacggtccgtgacgagcggggcctgccgggc
acgcctgcggaggacggtccggtcgaggagtcgttcgtccactccggcggcacggtcgac
ttcgcggagttcctcgcccccgacgccccggtgacgggcacctggcacctgatcggttcc
gggtcgttcaccgagaccgtcccggtcctcgacagcaaggggcacatgaccccgcagccc
gtcgatcgcgactgcgaggtcgacgtcgcactccggtggggcaccgggtacgccaccgag
ctgcgcacgttcgtcaacatcatcgccacgccgaagggtggctctcaccagtccggattc
gaggccgggctgctcaaggtggtgcgcaaggccgtcgagacgaacgcccgcaagctcaag
gtgtcgacgaaggacggctcggagcgcatcgacaaggaggacgtgctcgcgggcctcacg
gccgtcgtcacggtccgcctcgccgagccccagttcgaggggcagaccaaggaggtcctc
gggaccgcgcccgttcgcggcatcatggcgcgggtcgtcgagaaggagctggcggcgcgg
ctcaacgcgaccacccgggacggcaagacccaggcggcgctgctgctcgacaaggtcgtc
gccgagatgcgcgcgcgggtcaccgcccgcaagcagaaggagatctcgcgccgcaagaac
gccctcgagtcgtcgtcgctccccgcgaagctggcggactgccgcagcaacgacgtcgca
cgcagcgagctcttcatcgtcgagggagacagcgcgctcggtactgcgaagctggccagg
agctcggacttccaggcgctcctgccgatccgcggcaagatcctcaacgtccagaaggcg
tcgctgagcgacatgctccgcaatgccgagtgcgccgcgatcatccaggtcatcggagcg
gggtcgggccgctcgttcgacctcgaggcgtcgcgctacggaaagatcgtgctgatgacg
gacgccgacgtcgacggcgcgcacatcaggaccctgctgctcacgctcttcttccgctac
atgcggccgctggtggacgccggtcgggtcttcgccgccgtcccgccgctgcatcgcgtc
gaggtcagtgcgacgggccgcaagaaggccgagtacatctacacctactcggaggccgag
ctcgccgcgacgctcaagaagctcgaccgcgcgggccgtcggtacaaggacgacatccag
cgctacaagggcctgggggagatggacgcggaccagctcgcggagacgacgatggacccg
cgccaccggaccctgcgccgcgtgaccgcagaccacgccgagtcggcggagcgtgtcttc
gagctcctcatgggcagcgacgtgccccctcgcaaggagttcatcgtcgccggcgcgcac
gagatcgaccggtccaagatcgacacctga
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