Paraoerskovia sediminicola: GCM125_26950
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Entry
GCM125_26950 CDS
T09128
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
psek
Paraoerskovia sediminicola
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psek03016
]
GCM125_26950
Enzymes [BR:
psek01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
GCM125_26950
Transfer RNA biogenesis [BR:
psek03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GCM125_26950
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
NLS_NINJA_AFP
Motif
Other DBs
NCBI-ProteinID:
BDZ43396
LinkDB
All DBs
Position
complement(2827739..2829070)
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AA seq
443 aa
AA seq
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MTAQTGPPAGDVPDDPAPEAEASTVSAAEPSDEPAAEPAPEPRPLTAPADGVPPVVDTPA
AFARVVEAFAAATGPVAADAERASGYRYGQATYLVQVKREGAGIALIDPVGVPDMSPLLE
AVGDTEWILHAASQDLPGFAEHGLRPARVFDTELAARLLGLERVGLAAVVAELLGLGLAK
EHSAVDWSTRPLPDEWLRYAALDVEVLIPLRDVLAGMLEEAGKAEWAAQEFEAVRTAPPP
AARVDPWRRTKEMHSLRDRRQVAVVRSLWEARDENARRRDVAPGRVLPDRAIVAAAKAMP
RTVPQLVAIREFAGRATKRRAPQWQAAIDEALRLPASELPTLRGPRSDAPPPPRAWKDRH
PEALARFEVARPLVAARAEALSMPVENLLRPDTLRRLCFTPPSPIDAATVDEFLAAHDAR
PWQRDLLAAELADALRTADAPDA
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgcagacgggaccgcccgcgggcgacgtgcccgacgacccggcacccgaggcc
gaggcgagcaccgtgtccgcggcagagccttcggacgagcccgcagctgagcccgccccc
gagccgcggccgctgacagcacccgcggacggcgtcccgcccgtcgtggacacgcccgcg
gccttcgcccgcgtcgtcgaggcgttcgccgcagcgaccgggccggtggccgcggacgcc
gagcgcgcgtccggctaccgctacggccaggcgacctacctcgtccaggtcaagcgcgag
ggcgccggcatcgcgctcatcgaccccgtgggcgtccccgacatgtctcccctgctcgag
gccgtcggtgacaccgagtggatcctgcacgcggcgtcgcaggacctcccgggcttcgcc
gagcacgggctgaggccggcgcgcgtgttcgacaccgagctcgccgcgcgcctgctcggc
ctggaacgggtcggactggccgccgtggtcgccgagctcctcggcctcggcctcgccaag
gagcactcggcggtcgactggtccacccggccgctgcccgacgagtggctgcgctacgcc
gcgctcgacgtcgaggtgctgatccccctgcgcgacgtcctggcggggatgctcgaggag
gccgggaaggcggagtgggccgcgcaggagttcgaggcggtccggaccgcgccgccgccg
gctgcccgggtcgacccgtggcgacgcaccaaggagatgcactcgctgcgcgaccgccgt
caggtggccgtcgtccggagcctgtgggaggcgcgcgacgagaacgcccgccgacgcgac
gtggcgcctggccgcgtcctgcccgaccgcgcgatcgtcgccgccgcgaaggccatgccg
cgcaccgtcccgcagctcgtcgcgatccgcgagttcgccggccgcgccaccaagcgccgt
gcgccccagtggcaggctgcgatcgacgaggcgctgcggctcccggcgtcggagctgccg
acgctccgcggtccccggtcggacgcgcctccgccaccgcgtgcctggaaggaccgccac
cccgaggccctcgcgcggttcgaggtcgcccgcccgctcgtcgccgcgcgcgccgaggcc
ctgtcgatgccggtcgagaacctcctgcggcccgacacgctgcggcggttgtgcttcacc
ccgccgtcgccgatcgatgccgccaccgtcgacgagttcctcgccgcgcacgacgcgagg
ccgtggcagcgggacctgctcgccgccgagctcgcggacgccctgcggacggccgacgcg
cccgacgcctga
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