Paraoerskovia sediminicola: GCM125_28450
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Entry
GCM125_28450 CDS
T09128
Symbol
polA
Name
(GenBank) DNA polymerase
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
psek
Paraoerskovia sediminicola
Pathway
psek03030
DNA replication
psek03410
Base excision repair
psek03420
Nucleotide excision repair
psek03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GCM125_28450 (polA)
03410 Base excision repair
GCM125_28450 (polA)
03420 Nucleotide excision repair
GCM125_28450 (polA)
03440 Homologous recombination
GCM125_28450 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psek03032
]
GCM125_28450 (polA)
03400 DNA repair and recombination proteins [BR:
psek03400
]
GCM125_28450 (polA)
Enzymes [BR:
psek01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GCM125_28450 (polA)
DNA replication proteins [BR:
psek03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GCM125_28450 (polA)
DNA repair and recombination proteins [BR:
psek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
GCM125_28450 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GCM125_28450 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
DNA_pol_lambd_f
HHH
Motif
Other DBs
NCBI-ProteinID:
BDZ43546
UniProt:
A0ABN6XJ31
LinkDB
All DBs
Position
2986175..2989108
Genome browser
AA seq
977 aa
AA seq
DB search
MAYRAFFALPVENFSTTTGQSTNAVFGFTSMLINLLRDEKPTHIAVAFDAGSATFRTEQL
PTYKAGRAATPEPFKGQVPLIREVLEALNVPALEKANFEADDIFATLSTQAAALGMEVLV
CSGDRDAFQLVTDDVTVLYPKRGVSDLARMTPDAVEEKYGVRPENYPDLAALVGETADNL
PGVPGVGPKTAAKWIAQFGDLDAVLDGAETIKGKAGENLRAHLEQVRTNRRLNALLRDME
LPLGPDDLGLRPWDRTAVHTVFDALEFAALRERLLALGGSDDEVDAAPAMTVDVADPGPD
GLGEWLSARADVTLGLDVEGRTAPTGADAWAVTVTDGSEAVVVDLADVSAADESALAAWL
ADDARAIVVHGAKSAAHALAARGMDLRGVTFDTELAAYLCYPDQRGYDLSDLAVRHLHRE
LRVDDEPEAQGALDLSVDGSGAGRQAAARAAAVLELSEALVEVLADRGATGLLRDLELPL
THVLGDMERAGIAVDVEHLTGLERHFAGQVAQAAADAYEVIGREVNLGSPKQLQEVLFDQ
LEMPKTKKIKTGWTTDAAALAELFVKTGHPFLEHLLAHRDATRLRQTVEGLLKSVADDAR
VHTSFQQTIAATGRLSSTDPNLQNIPIRTEAGRRIRRAFVVGPGYETLLTADYSQIEMRI
MAHLSGDEGLIDAFRSGEDLHNYVGSRVFDVPADEVTPAMRSKIKAMSYGLAYGLSSYGL
SKQLSIGVPEAQSLMDDYFSRFGESGTTSRGSSTKRGPRGTPRRSSGVAGTSRTSRATTG
SGGTWRSAWRSTRRSRGAQQTSSRSRCSGSATRSTPADSRRACCCRCTTSCSSRWHRGRR
TRSSASSAPRWGPRPSSRCRWTCRSVSVPAGTTPATDQGGRRRRPQLPAAGAAVTAGRRH
PGRRATTTMVPGISRPRTGPHPPQTCWLLSGHSGSTTSTTWRPAETTSLTWSPTVRWYSA
YVTRPAPSDSTYGRRSK
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atggcgtaccgcgcgttcttcgcgctcccggtcgagaacttctccacgacgaccggccag
tccaccaacgccgtcttcggtttcacgtcgatgctcatcaacctcctgcgggacgagaag
ccgacgcacatcgccgtcgcgttcgacgccgggagcgcgacgttccgcaccgagcagctc
ccgacctacaaggccggtcgcgctgcgacgccggagcccttcaaggggcaggtgccgctg
atccgcgaggtgctcgaggcgctcaacgtcccggccctggagaaggcgaacttcgaggcg
gacgacatcttcgcgaccctctcgacccaggccgccgcgctcggcatggaggtcctggtg
tgctccggcgaccgggacgcgttccagctcgtgaccgacgacgtgacggtgctctacccc
aagcggggcgtctccgacctggcacgcatgacccccgacgcggtcgaggagaagtacggc
gtccgccccgagaactacccggacctcgccgcactcgtgggcgagaccgcggacaacctc
cccggtgtccccggcgtcgggccgaagaccgccgcgaagtggatcgcccagttcggcgac
ctcgacgcggtgctcgacggcgccgagacgatcaagggcaaggcaggcgagaacctgcgg
gcccacctcgagcaggtgcggacgaaccgccggctcaacgcgctgctgcgcgacatggag
ctgccgctcggtcccgacgatctcggcctacgaccctgggaccgcacagcggtgcacacg
gtcttcgacgcgctcgagttcgccgcgttgcgcgagcgccttctcgcgctgggcgggagc
gacgacgaggtcgacgccgcccctgcgatgacggtcgacgtcgcggacccgggccccgac
gggctcggggagtggctctccgcacgcgcggacgtgacgctcgggctcgacgtcgagggt
cgcacggcacccacgggggccgacgcgtgggcggtgacggtgaccgacggttcggaggcc
gtcgtcgtcgacctcgccgacgtctccgctgccgacgagtccgccctcgcggcgtggttg
gcggacgacgcgcgcgcgatcgtcgtccacggcgcgaagtcggccgcccacgccctcgcc
gcccgcggcatggacctgcgcggcgtcaccttcgacaccgagctggccgcctacctctgc
tacccggaccagcggggctacgacctcagcgacctcgccgtccgccacctccaccgggag
ctgcgcgtcgacgacgagcccgaggcccagggcgcgctggacctctcggtcgacggctcc
ggtgccggccggcaggccgcggcgcgggccgctgcggtcctcgagctctctgaggcgctc
gtcgaggtcctcgcagaccgcggcgccacggggctcctgcgcgacctcgagctgccgctg
acccatgtcctcggcgacatggagcgcgccgggatcgccgtggacgtcgagcacctcacc
gggctcgagcggcacttcgccggccaggtggcgcaggccgccgccgacgcgtacgaggtc
atcggccgggaggtgaacctcggctcgccgaagcagctccaggaggtgctgttcgaccag
ctcgagatgccgaagacgaagaagatcaagacgggctggacgacggacgccgcggcgctc
gcggagctgttcgtcaagaccgggcacccgttcctggagcacctgctcgcccaccgcgac
gcgacgcgtctgcggcagaccgtcgagggcctcctcaagtccgtcgcggacgacgcacgc
gtccacacgtcgttccagcagaccatcgcggcgaccggccgcctcagctcgaccgacccc
aacctccagaacatcccgatccgcacggaggcaggccggcgcatccggcgggcgttcgtg
gtcgggccgggctacgagacgctgctcacggcggactacagccagatcgagatgcggatc
atggcccacctctcgggcgacgagggcctgatcgatgcgttccgctcgggcgaggacctg
cacaactacgtgggatcgcgcgtgttcgacgtgcccgccgacgaggtcacgcccgcgatg
cgctcgaagatcaaggcgatgtcgtacggcctcgcgtacgggctgtcctcctacgggctg
tcgaagcagctcagcatcggagtgccggaggcacagtcgctgatggacgactacttctcg
cggttcggggagtccgggactacctcacgggggtcgtcgacgaagcgcggtccacggggt
acaccgcgacgatcctcgggcgtcgccggtacctcccggacctcacgagcgacaaccggc
agcggcgggacatggcggagcgcatggcgctcaacgcgccgatccaggggagcgcagcag
acatcatcaaggtcgcgatgctcggggtccgcaacgcgctcgactccggcggactcacgt
cgcgcctgctgctgcaggtgcacgacgagctgctcgtcgaggtggcaccgggggagaagg
acgaggtcgagcgcatcctccgcgccgagatgggggccgcggccgagctctcggtgccgc
tggacgtgtcggtcggtgtcggtaccagctggcacgacgccggccactgaccagggaggt
cgccgccgccggccgcagctgccggccgccggtgcggccgtgacggccggacgtcgtcac
cccggtcgacgggcgacgacgaccatggtccccgggatcagccgaccgcgcaccgggccc
cacccgccccagacctgctggttgctctcgggccactcgggctcgacgacgtccacgacc
tggagaccggccgagaccacgtccctgacgtggtcgccgaccgtccggtggtactcggcg
tacgtgacccgacccgcgccgtccgactccacgtacgggcggcggtcgaagtag
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