Paraoerskovia sediminicola: GCM125_29470
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Entry
GCM125_29470 CDS
T09128
Name
(GenBank) DNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psek
Paraoerskovia sediminicola
Pathway
psek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM125_29470
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psek03019
]
GCM125_29470
03009 Ribosome biogenesis [BR:
psek03009
]
GCM125_29470
Enzymes [BR:
psek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GCM125_29470
Messenger RNA biogenesis [BR:
psek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCM125_29470
Ribosome biogenesis [BR:
psek03009
]
Prokaryotic type
rRNA helicases
GCM125_29470
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
BDZ43648
UniProt:
A0ABN6XFE4
LinkDB
All DBs
Position
3088608..3090578
Genome browser
AA seq
656 aa
AA seq
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MTDVRAPERATDQTTLPTDTAGETATDAPVGPTFADLGLPAELLSAISDLGFVTPSAIQA
QAIPTLLGGRDITGIAQTGTGKTAAFGLPLLAAIDPKLRAVQALVLAPTRELAMQVAEAI
ETFAARMPGVEVVALYGGAPFGPQARALTHGAQIVVGTPGRVIDHLERKTLKLDAIRFLA
LDEADEMLRMGFAEDVETVFSQAPRERQVALFSATMPPQIRRVAQHHLNDPVEIAVARQA
TTVTSVRQTYAVVPFRHKAGSLARVLAVSEADAAIVFVRTRAAADEVGAALVERGITAAT
ISGDVAQKDREKIVERLRSGQVDVLVATDVAARGLDVDRIGLVVNFDLPKEPEAYVHRIG
RTGRAGRSGTALSFVNPHERGRLKQIERMIRVQLEEIEIPSPADVSAHKTKNLLAKLPER
IAAGRLAMYTELVKAHLAEHDGDPVEIAAALAALAVGDDGPQAREEQERFEAERAEARAA
RQSRSSDRDREDHRAPRRGPRDDARRERRETGIRRDSQGTRYRVAVGHSHGVEPRGIVGA
LTNEGGLQGKDLGKIDIFSSFSLVDILTPMSPETLDRIGRARVGGKALRISEDRGAPSHP
RTPATAAGTRTAATARRAAPTAGVPRGTAAVASATATAPRATARRADSALTPRRPC
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgtccgtgcgcctgagcgcgccaccgaccagaccacactccccaccgacacc
gccggcgagaccgcgaccgacgcccccgtcggccccaccttcgcggacctcggcctcccg
gccgagctgctgagcgcgatctccgacctcggcttcgtgacgccgtccgccatccaggcg
caggcgatccccacgctcctcggcggccgcgacatcaccggcatcgcccagaccggcacc
ggcaagaccgccgcgttcggcctcccgctgctcgccgcgatcgacccgaagctgcgcgcc
gtccaggcgctcgtcctcgccccgacccgcgagctcgccatgcaggtcgccgaggccatc
gagaccttcgccgcgcgcatgccgggcgtcgaggtcgtcgccctctacggaggcgcgccc
ttcggcccccaggcccgcgccctcacccacggcgcacagatcgtcgtcggcaccccgggc
cgcgtcatcgaccacctcgagcgcaagaccctcaagctcgacgcgatccgcttcctcgcc
ctcgacgaggccgacgagatgctccgcatgggcttcgccgaggacgtcgagaccgtcttc
tcccaggccccccgcgagcgtcaggtcgcactcttctccgcgaccatgcccccgcagatc
cgccgcgtcgcccagcaccacctcaacgacccggtcgagatcgccgtcgcccgccaggcc
acgaccgtgaccagcgtccgccagacctacgccgtcgtcccgttccgccacaaggccggc
tcgctcgcccgcgtcctcgcggtctccgaggccgacgccgccatcgtgttcgtccgcacc
cgcgccgcagccgacgaggtcggtgccgcactggtcgagcgcggcatcaccgccgccacc
atctcgggcgacgtcgcgcagaaggaccgcgagaagatcgtcgagcgcctccgctccggc
caggtggacgtcctcgtcgccaccgacgtcgccgcccgcggcctcgacgtcgaccgcatc
gggctcgtcgtgaacttcgacctgcccaaggagcccgaggcctacgtgcaccgcatcggc
cgcaccggccgcgccggccgctccggcaccgcgctctcgttcgtcaacccgcacgagcgt
ggccgcctcaagcagatcgagcgcatgatccgcgtccagctcgaggagatcgagatcccg
tcccccgcggacgtctcggcccacaagaccaagaacctcctcgcgaagctccccgagcgc
atcgccgccggtcgcctcgccatgtacaccgagctcgtcaaggcgcacctcgccgagcac
gacggcgaccctgtcgagatcgccgcggcgctcgcggcgctcgcggtcggggacgacggc
ccgcaggcccgcgaggagcaggagcgcttcgaggcggagcgtgccgaggctcgtgccgcc
cgccagtcgcggtcgagcgaccgggaccgcgaggaccaccgcgcgccccgccgcggcccc
cgcgacgacgcccgtcgcgagcgtcgtgagaccggcatccgtcgggactcccagggcacg
cgctaccgcgtcgccgtcggccactcgcacggcgtcgagccgcgcgggatcgtcggagcc
ctcacgaacgagggcggtctgcagggcaaggacctgggcaagatcgacatcttctcgagc
ttctcgctggtcgacatcctcaccccgatgagcccggagacgctggaccgcatcggccgc
gcccgcgtgggcggcaaggcgctgcgcatcagcgaggaccgcggcgccccgtcgcacccg
cgcacccccgcgacggcggccgggactcgtaccgcggccacggcccgtcgggccgcaccg
acggcgggcgtccctcgcgggacagccgcggtggcgagcgctacggcgaccgcgccccgc
gctacagcgcggcgcgctgactccgcgctgactccgcgccggccgtgctga
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