Paraoerskovia sediminicola: GCM125_31200
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Entry
GCM125_31200 CDS
T09128
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
psek
Paraoerskovia sediminicola
Pathway
psek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM125_31200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psek03019
]
GCM125_31200
03400 DNA repair and recombination proteins [BR:
psek03400
]
GCM125_31200
Enzymes [BR:
psek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GCM125_31200
Messenger RNA biogenesis [BR:
psek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GCM125_31200
DNA repair and recombination proteins [BR:
psek03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
GCM125_31200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
Pribosyltran
DEAD
RecQ_Zn_bind
HEM4
Motif
Other DBs
NCBI-ProteinID:
BDZ43821
LinkDB
All DBs
Position
3256685..3258529
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AA seq
614 aa
AA seq
DB search
MVVDEAHCISDWGHDFRPDYRRIRTLLAELPGGIPVLATTATANERVTADVAEQLGVSHA
SAAGGVATDVLVLRGRLDRESLHLAVLALPDQPTRVAWLAETLQDVDGSGIVYCLTVSAA
EQVASQLRATGLAVQAYTGRTDPAEREQLEADLKENRVKALVATSALGMGFDKPDLAFVV
HLGAPSSPIAYYQQVGRAGRGVDQAVVVLLPGQEDRAIWDWFGSQAFPAEQQVRLTLAAM
EDGRTWSTAALETQVDLKRSRLESMLKVLDVDGAVKRVKGGWVTTGEPWAYDADRYARVA
ATREAEQRSMLDYVATDGCRMAYLRQVLDDPELDAAWRCGRCDSCGGVGLPEAPDADAVA
AAREDMDRPGVEVIARRQWPSGMDTLDVDLKGKIPPQEQAEAGRAVARLDGLGWSGALRD
LFAARDADGRPADGQTPVPLRKAAVRVLEDWDALWRSPEASDDIETDQPTDAADGSEHAV
VERAAADASAGEPERRSPAIEGVVAIRSTTRPQLVEHLATGLARYLGVPLVGTVGPVSGR
EEPGRHDVNSAQRLAGVAHRLGLELTEAAAAGLPGRAVLLVDDSTDSGWSLTVAARLLRR
AGAEAVHPFVLGVS
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
gtggtcgtcgacgaggcgcactgcatctccgactggggccacgacttccgccccgactac
cggcggatccgcacgctcctcgccgagctcccgggaggcatcccggtgctcgcgacgacc
gccacggcgaacgagcgcgttacggcggacgtcgccgagcagctcggcgtgtcccacgcc
tcggcggcaggcggggtcgcgaccgacgttctcgtgctgcggggtcggctcgaccgtgag
tcgctgcacctcgcggtgctcgccctgcccgaccagccgacccgtgtcgcctggctcgcg
gagacgctccaggacgtcgacggttcggggatcgtgtactgcctgaccgtctcggccgcc
gagcaggtcgcgtcccagctccgtgcgaccgggctcgccgtccaggcgtacaccggtcgc
acggatccggccgagcgtgagcagctcgaggccgatctcaaggagaaccgggtcaaggcg
ctcgtcgcgacgtccgccctcggcatggggttcgacaagcccgacctcgcgttcgtcgta
cacctcggcgccccctcctcgcccatcgcgtactaccagcaggtcggacgtgcaggtcga
ggcgtcgaccaggcggtcgtcgtgctcctccccggtcaggaggaccgggcgatctgggac
tggttcggctcgcaggcgttccccgccgagcagcaggtccggctcacgctcgccgccatg
gaagacggccgcacctggtcgacggcagccctcgagacccaggtggacctcaagcgttcg
aggctcgagtcgatgctcaaggtgctcgacgtcgacggtgcggtcaagcgggtcaagggc
ggctgggtcaccactggtgaaccgtgggcgtacgacgccgaccggtacgcccgcgtcgcc
gcgacgcgcgaggcggagcagcggtcgatgctcgactacgtcgcgaccgacgggtgccgc
atggcctacctgagacaggtcctcgacgaccccgagctcgacgccgcatggcgctgcggc
cgctgcgacagctgcggcggcgtcgggctccccgaggccccggacgccgacgcggtcgcc
gccgcccgcgaggacatggaccgaccgggcgtcgaggtgatcgcgcgtcgccagtggccg
agcggcatggacaccctggacgtcgacctcaaggggaagatcccgcctcaggaacaggcg
gaagccggtcgtgcggtggcccggctcgacgggctcgggtggtccggtgcgctccgcgac
ctgttcgccgcgcgcgacgccgacgggcggcccgcggacggccagacgcccgtaccgctg
cgcaaggcggcggtccgggtgctcgaggactgggacgcgctgtggcggtcccccgaggcg
agcgacgacatcgagacggatcagcccaccgacgccgccgacggctccgagcacgccgtc
gtcgagagggcagcggccgatgcctctgcaggcgagcccgagcgccgcagcccggcgatc
gagggcgtcgtcgccatccgctccaccacacgaccccagctcgtcgagcacctcgccacc
gggctcgcccggtacctcggggtaccgctcgtcggcacggtcggtccggtgtcgggccgc
gaagagcctggacgccacgacgtgaactccgcgcagcggctcgccggcgtcgcgcacagg
ctgggcctcgagctcaccgaggcggccgccgccgggctgcccgggcgcgccgtgctgctc
gtcgacgactcgacggactccggctggagcctgacggtggccgcccggctgctccggcgg
gccggtgccgaggcggtccacccgttcgtgctcggcgtgagctga
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