KEGG   Paraoerskovia sediminicola: GCM125_31250
Entry
GCM125_31250      CDS       T09128                                 
Name
(GenBank) DNA-directed DNA polymerase
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
psek  Paraoerskovia sediminicola
Pathway
psek03030  DNA replication
psek03430  Mismatch repair
psek03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:psek00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    GCM125_31250
   03430 Mismatch repair
    GCM125_31250
   03440 Homologous recombination
    GCM125_31250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:psek03032]
    GCM125_31250
   03400 DNA repair and recombination proteins [BR:psek03400]
    GCM125_31250
Enzymes [BR:psek01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     GCM125_31250
DNA replication proteins [BR:psek03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     GCM125_31250
DNA repair and recombination proteins [BR:psek03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     GCM125_31250
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon MCM10_OB HHH_3 DUF655
Other DBs
NCBI-ProteinID: BDZ43826
LinkDB
Position
complement(3260834..3264427)
AA seq 1197 aa
MPSAVSPDARPTSRKDDFVHLHVHTEYSMLDGAARLDDLFAETGRLGQTAIGTTDHGYVF
GAFEFWSKAKAAGIKPILGVEAYVTPGTSRHDQTRVRYGEKGQESDDVSARGAYTHMTMW
ARDDTGMHNLFRASSLASLEGQMGKWPRMDRELLSTYSEGLIASTGCPSGEIQTRLRLGQ
WDEAVRAAGELQDIFGKEYFYVELMDHGLDIETRVIKDLLRLSETIGAPLVATNDLHYVT
QQDSASQEALLCINSGSTLTDPDRFKFDGDGYYVKSGAEMRRIWSELPEACDNTLLIAEQ
CDVNFNTSANYMPHFPVPEGEDEVSWFVKEVEAGLHRRYPGGVPDASREQARYETEVIVQ
MGFPGYFLVVADFINWAKAQGIRVGPGRGSAAGSMASYLMGITELDPLEHGLIFERFLNP
ERVSMPDVDVDFDERRRGEVIRYVTDKYGDDRVAQVVTYGTIKAKQALKDSSRLLGFPFA
MGEKLTKAMPPAVMGKDITLTGIFDPTDKRYAEADEFRKMHAVDPEAQRVVELAQGIEGL
KRQWGVHACALIMSSDPLIDIIPIMRRPQDGAIITQFDYPTCEGLGLIKMDFLGLRNLTI
LDDALENIVMNGKEPVEIEHVALDDPATYALLSRGDTLGVFQLDGGPMRSLLRQLRPDNF
EDVSAVIALYRPGPMGMNSHTNYALRKNGLQEVTPIHPELAEPLSEILDETHGLIVYQEQ
VQRAAQILAGYSLGQADLLRRAMGKKKQEVLDKEYVPFQAGMRERGYSDQAVKAVWDVLV
PFAGYAFNKAHSAGYGLVSYWTGYLKANYPTEYMAGLLTSVRDDKDKSALYLNECRRMHI
TVLPPDVNSSAANFTAVGEDIRFGLSAVRNVGRNVVDAIVAAREEKGEFTSFTDFLDKVP
AVVCNKRTIESLIKAGAFDSLGHPRRALLVVHEQAVESVIGVKRKEAEGQFDLFSDLGGE
PDDAMTFSVEVPQIPDWDKKQRLAFEREMLGLYVSDHPLSGLEHVLTRAADTGIAALMID
EGRSDGSTVTVAGLITSLQRKMSKNGNPWAAVTIEDLEGAVEVMFFGETYLAYSTILAED
QVVVLRGRVRRRDETMQLQAMEVSLPDVSDVEETPVLVRLPAARCTPPLVERLREILATH
PGVTDVHLRLASPGRASVVRVGADLRVEKSPALYGDLKALLGPSCLQAPGQPVGAAL
NT seq 3594 nt   +upstreamnt  +downstreamnt
atgccgtctgccgtgtcacccgatgcccgcccgacgagccgcaaggacgacttcgtccac
ctgcacgtccacaccgagtactcgatgctcgacggtgcggcgaggctcgacgacctcttc
gcggagacgggccggctcggccagacggcgatcggcacgaccgaccacggctacgtgttc
ggcgccttcgagttctggtccaaggcgaaggcggccgggatcaagccgatcctcggcgtg
gaggcgtacgtcacgccgggcaccagccggcacgaccagacccgtgtgcgctacggcgag
aagggccaggagtccgacgacgtctcggcgcgcggcgcgtacacgcacatgacgatgtgg
gcccgtgacgacaccgggatgcacaacctgttccgggcgagctcgctggcctcgctcgag
gggcagatgggcaagtggccgcgcatggaccgcgagctcctctcgacgtactcggagggg
ctcatcgcgtcgaccggctgcccgtccggcgagatccagacgcgcctgcgcctcggccag
tgggacgaggcggtgcgcgccgccggtgagctgcaggacatcttcggcaaggagtacttc
tacgtcgagctcatggaccacggcctcgacatcgagacccgcgtcatcaaggacctgctg
cggctctccgagacgatcggcgcgcccctcgtcgcgacgaacgacctgcactacgtgacg
cagcaggactccgcctcgcaggaggccctgctgtgcatcaactcgggttcgaccctgacc
gacccggaccgcttcaagttcgacggtgacggctactacgtgaagtcgggcgccgagatg
cgccgcatctggtccgagctccccgaggcctgcgacaacacgctgctcatcgccgagcag
tgcgacgtgaacttcaacacctccgcgaactacatgccgcacttccccgtccccgagggc
gaggacgaggtcagctggttcgtcaaggaggtcgaggccgggctgcaccgccggtacccg
ggaggcgtgccggacgcctcccgcgagcaggcgcggtacgagaccgaggtcatcgtccag
atgggcttcccgggctacttcctcgtcgtcgccgacttcatcaactgggccaaggcgcag
gggatccgcgtcgggccgggccgagggtccgcggcaggctccatggcctcctacctcatg
gggatcaccgagctcgacccgctcgagcacgggctcatcttcgagcggttcctcaacccg
gagcgcgtctccatgcccgatgtcgacgtggacttcgacgagcgtcgccgcggcgaggtg
atccgctacgtcaccgacaagtacggggacgaccgggtcgcgcaggtcgtcacctacggc
acgatcaaggccaagcaggcgctgaaggactcgtcccggctgctgggcttcccgttcgcg
atgggggagaagctcaccaaggcgatgccgcccgccgtcatgggcaaggacatcaccctg
accggcatcttcgaccccaccgacaagcgctacgcggaggccgacgagttccgcaagatg
cacgcggtcgacccggaggcgcagcgggtcgtcgagctcgcgcagggtatcgagggcctg
aagcggcagtggggcgtgcacgcctgcgcgctcatcatgtccagcgaccccctgatcgac
atcatcccgatcatgcggcggccgcaggacggcgcgatcatcacgcagttcgactacccc
acgtgcgaggggctcgggctgatcaagatggacttcctggggctgcgcaacctcacgatc
ctcgacgacgccctcgagaacatcgtcatgaacggcaaagaaccggtcgagatcgaacac
gtcgcgctcgacgacccggccacctacgcgctgctctcccgcggtgacaccctgggcgtg
ttccagctcgacggcgggccgatgcgctcgctgctgcgccagctgcggcccgacaacttc
gaggacgtctccgcggtcatcgcgctctaccgccccggtccgatggggatgaactcccac
accaactacgcgctgcgcaagaacggcctccaggaggtcaccccgatccacccggagctc
gccgagccgctctcggagatcctcgacgagacccacggtctgatcgtctaccaggagcag
gtccagcgcgccgcgcagatcctcgcggggtactcgctcggtcaggccgacctgctccgc
cgcgcgatgggcaagaagaagcaggaggtgctcgacaaggagtacgtcccgttccaggcg
ggcatgcgggagcgcgggtactccgaccaggccgtcaaggcggtctgggacgtgctcgtg
cccttcgccggctacgcgttcaacaaggcgcactcggccggctacgggctcgtgtcctac
tggacggggtacctcaaggcgaactacccgaccgagtacatggccgggctgctcacgagc
gtccgcgacgacaaggacaagtcggcgctctacctcaacgagtgccgccgcatgcacatc
actgtcctcccgccggacgtgaactcgtccgcggcgaacttcaccgcggtcggcgaggac
atccggttcgggctgagcgccgtgcggaacgtcggacgcaacgtcgtcgacgcgatcgtg
gccgcacgcgaggagaagggcgagttcacctcgttcaccgacttcctcgacaaggtgcct
gccgtggtctgcaacaagcgaaccatcgagtcgctgatcaaggcgggcgcgttcgactcc
ctggggcaccctcgacgtgcactcctcgtggtccacgagcaggccgtcgagtcggtgatc
ggggtcaagcgcaaggaggccgagggtcagttcgacctgttctcggacctgggcggggag
ccggacgacgccatgacgttcagcgtcgaggtgccgcagatcccggactgggacaagaag
cagcggctggcgttcgaacgggagatgctcggtctctacgtctccgaccacccgctgtcc
gggctggagcacgtgctcacgagggccgcggacacgggcatcgccgcgctgatgatcgac
gagggccgctccgacgggtcgaccgtcacggtcgcggggctcatcacgtccctccagcgc
aagatgagcaagaacggcaacccgtgggccgccgtgacgatcgaggacctcgagggcgcc
gtcgaggtcatgttcttcggcgagacgtacctcgcctactcgacgatcctcgcggaggac
caggtcgtggtgcttcgcggccgggtacgacggcgggacgagaccatgcagctccaggcg
atggaggtctccctgcccgacgtctccgacgtcgaggagaccccggtcctggtgcgcctg
cccgccgcccggtgcacgccgccgctcgtggagaggctgcgggagatcctcgcgacccac
cccggcgtcacggacgtgcacctgaggctcgcgagccccggtcgggcgagcgtcgtccgc
gtgggtgccgacctccgcgtcgagaagtcgcccgcgctctacggcgacctgaaggcgctc
ctcggtccgtcgtgcctgcaggcgcccggccagccggtcggagcagcgctgtga

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