Paraoerskovia sediminicola: GCM125_32070
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Entry
GCM125_32070 CDS
T09128
Name
(GenBank) hypothetical protein
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psek
Paraoerskovia sediminicola
Pathway
psek03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GCM125_32070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psek03019
]
GCM125_32070
03016 Transfer RNA biogenesis [BR:
psek03016
]
GCM125_32070
Enzymes [BR:
psek01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GCM125_32070
Messenger RNA biogenesis [BR:
psek03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GCM125_32070
Transfer RNA biogenesis [BR:
psek03016
]
Prokaryotic type
tRNA degradation factors
GCM125_32070
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-ProteinID:
BDZ43908
UniProt:
A0ABN6XII1
LinkDB
All DBs
Position
complement(3344926..3346083)
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AA seq
385 aa
AA seq
DB search
MEGPEIQFAEAEIDNGRFGTRTVRFETGRLAQQAAGSAVAYLDGETMLLSATTVGKHPKD
HFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPLFVKGVRNEVQ
VVVTVLAAHPDDAYDTLAINAASLSTQLSGLPFSGPAGAVRIALIDGQWVAFPKYSDKER
AVFDMVVSGRIVTDSQGNPDVAIAMIEAEATDNSWNLIKEQGVAAPTESVVAEGIEAAKP
FIRQLCEAQADLAARATRPTKELPLFPDYQDDTYSAVENAATAPWARRSPSPTSRTASRA
STRSSPRSSSPSPARSRAARRSSPPRTALCRRSSSVSASSPTASASTAVASRTSAPWVPR
SRSCRACTARRCSSAARPRSWVSPR
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggagggtcccgagatccagttcgccgaagccgagatcgacaacggccgcttcggcacc
cgcaccgtccgcttcgagacgggccgcctcgcccagcaggccgccggctccgccgtcgcc
tacctcgacggcgagaccatgctgctgtcggccaccacggtcggcaagcaccccaaggac
cacttcgacttcttcccgctgacggtggacgtcgaggagcgcatgtacgccgcgggacgc
atccccggctcgttcttccgtcgtgagggccgcccctcgaccgaggcgatcctcgcgtgc
cgtctcatcgaccgcccgctgcgcccgctgttcgtcaagggcgtccgcaacgaggtccag
gtcgtcgtgaccgtcctcgccgcgcacccggacgacgcgtacgacacgctcgccatcaac
gcggcgtcgctctcgacgcagctctccggcctgccgttctccggcccggccggtgccgtg
cgcatcgcgctcatcgacggccagtgggtcgcgttcccgaagtacagcgacaaggagcgc
gccgtcttcgacatggtcgtctccggccgcatcgtcacggactcccagggcaaccccgac
gtcgcgatcgcgatgatcgaggccgaggccacggacaactcgtggaacctcatcaaggag
cagggcgtcgccgccccgaccgagtccgtcgtcgccgagggcatcgaggccgcgaagccg
ttcatccgccagctctgcgaggcgcaggccgacctcgcggcgcgggccacgcgtccgacc
aaggagctgccgctcttcccggactaccaggacgacacctactcggccgtcgagaacgcc
gccaccgccccctgggcgaggcgctctccatcgccgacaagcaggaccgcgagtcgcgca
tcgacgcgatcaagtccgaggtcgtcgagtccctcgccggctcgttcgagggccgcgaga
aggagctctccgccgcgtaccgcgctgtgcagaagaagctcatccgtcagcgcatcctct
ccgacggcttccgcatcgacggccgtggcctctcggacatccgcaccctgggtgccgagg
tcgaggtcctgccgcgcgtgcacggctcggcgctgttcgagcgcggcgagacccagatca
tgggtgtcaccacgctga
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