Paraoerskovia sediminicola: GCM125_32130
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Entry
GCM125_32130 CDS
T09128
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
psek
Paraoerskovia sediminicola
Brite
KEGG Orthology (KO) [BR:
psek00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psek03016
]
GCM125_32130 (truB)
Enzymes [BR:
psek01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
GCM125_32130 (truB)
Transfer RNA biogenesis [BR:
psek03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
GCM125_32130 (truB)
Prokaryotic type
GCM125_32130 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB_C
DKCLD
Motif
Other DBs
NCBI-ProteinID:
BDZ43914
LinkDB
All DBs
Position
complement(3350364..3351344)
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AA seq
326 aa
AA seq
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MSGGTPTGPHGGRARGGGAGSPRPPRRPTAADGLLVVDKPQGWTSHDVVGRVRGLAGTRK
VGHAGTLDPMATGVLVLGVGRATRLLTYVVGADKDYDATIRLGVATSTDDAEGETLAVVD
AGGVPRDAIDREVAALTGAISQVPSAVSAIKVDGRRAYALARAGEAVELAARPVVVSRFE
VRAVREVHEVRGPGAGEAGPDGDGVTAVDLDVSVTVSSGTYVRALARDLGAALGVGGHLT
ALRRTRVGGFALDAAADLEHYQAQADADGTLTTVPLADAARAVFPVRELTADEARELGFG
RRIQPSRWAPADRGAGSAEVPGARLR
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
gtgtccggcggcacgccgacgggtccgcacggcggccgcgcccgtggtggcggggccggg
tccccgcgaccccctcggcgtccgaccgcggccgacggcctgctcgtcgtcgacaagccg
cagggctggacgagccatgacgtcgtcgggcgcgtgcgcgggctcgccgggacccggaag
gtgggtcacgcgggcaccctggacccgatggcgacgggtgtcctcgtgctgggggtcggg
cgggccacccgcctgctgacctacgtggtcggtgccgacaaggactacgacgcgacgatc
cggctcggcgtggccacgtccaccgacgacgccgagggcgagacgctcgcggtcgtcgac
gccgggggagtgccgcgcgacgcgatcgaccgagaggtcgccgcgctgaccggcgcgatc
tcccaggtcccgagcgccgtgagcgccatcaaggtcgacggacgtcgcgcctacgccctg
gcgcgcgccggcgaggcggtcgagctcgccgcgcgaccggtcgtggtctcccgcttcgag
gtccgtgccgtccgcgaggtccacgaggtccgtggtcccggtgccggggaggccgggccg
gacggtgacggtgtcacggcggtcgacctcgacgtgtcggtcaccgtgtcgtcgggcacc
tacgtccgggcgctcgcccgcgacctcggcgccgcgctgggcgtcgggggccacctgacc
gcgctgcgccgcacgagggtcggtggcttcgccctggacgccgccgccgacctcgagcac
taccaggcgcaggccgacgccgacgggacgctgaccaccgtgccgctcgccgacgcggct
cgggcggtgttcccggtgcgggagctgacggcggacgaggcccgcgagctcggcttcggt
cgccgcatccagccgtcacggtgggcgcccgcggaccggggcgcaggcagcgccgaggta
ccgggggcgcggctccggtga
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