Pseudodesulfovibrio cashew: GM415_00585
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Entry
GM415_00585 CDS
T06353
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
psel
Pseudodesulfovibrio cashew
Pathway
psel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM415_00585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psel03019
]
GM415_00585
03009 Ribosome biogenesis [BR:
psel03009
]
GM415_00585
Enzymes [BR:
psel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GM415_00585
Messenger RNA biogenesis [BR:
psel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GM415_00585
Ribosome biogenesis [BR:
psel03009
]
Prokaryotic type
rRNA helicases
GM415_00585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGY38696
UniProt:
A0A6I6J7B7
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All DBs
Position
complement(133448..135184)
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AA seq
578 aa
AA seq
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MEENNTPEAVQEETAPDSSTPTMTFEELPDALRAACERAGWDRLMPVQEKALPFVMNDKD
VMVQARTGSGKTGAFVLPLLHKLDPSKAECQALVMVPTRELAQQVAQEARMLAGDDGINV
VAVYGGVGYKAQLDAFREGAQLVVGTPGRILDHLVRRSLSLDSLKVIIFDEADRMLSVGF
YPDMIEVKRYLPRRLEGSYMFSATFPQSVLRLAEEFMVKPEFLSLSSDETNVSAIAHQFV
EVQAMGKERKLLKLIELENPASAIIFCNTKRNVEFIAAVLSQFGFDAEGLTSDLTQNKRE
QLMARIKEGKLRFLVATDVAARGIDIPELSHVFMMEPPEDPESYVHRAGRTGRAGATGTA
ITLVDVIQKMELERIATRFKITFEEIKDPTEEDVAAIIEERLTALLEKKFRKLTPLQRER
ASRFLPLVEKYASDADSMGLIAMLLDELYQYTLHGKPAEPVSTGQPKRDRADREQPREDK
PKKSRPRKRKPRNGGGQQDSEGGSRDRSPRNRQDSPAEERAEPRRERREAPKEPRREKSE
APKEPRREPATRSEAESGESGGEAKPRPRRRRPRRRRR
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaacaacactcccgaagccgtacaggaagagacggcccctgattccagcacc
ccgacaatgacattcgaagaattgcccgatgccctgcgggccgcttgcgagcgggccgga
tgggaccggctcatgcccgttcaggagaaggcgctgcctttcgtcatgaacgacaaggac
gtcatggtccaggcccggaccggttccggcaagaccggcgctttcgtgctgccgctgctg
cacaagctcgacccgtccaaggcagagtgccaggctctggtcatggtccccacccgcgaa
ctggcccagcaggtcgcccaggaggcgcgcatgctggccggcgacgacggcatcaacgtg
gtcgccgtgtacggcggcgtgggctacaaggcccagctcgacgccttccgcgagggcgcg
cagctggtggtcggaactcccggccgcattctggaccacctggtccggcgcagcctgagc
ctggacagcctcaaggtcatcattttcgacgaggctgaccgaatgctgtccgtggggttc
tacccggacatgatcgaggtcaagcggtatctcccgcgccgcctggaaggcagctacatg
ttctcggccacattcccgcagtcggtcctccgactggccgaggagttcatggtcaagccg
gagttcctgagcctttccagcgacgagaccaatgtctcggctatcgcccaccagtttgtc
gaggtccaggccatgggcaaggagcgcaagctcctcaagctcatcgaactggagaatccc
gcttcggccatcattttttgcaataccaagcgcaatgtggagttcatcgccgcggtcctc
tcccagttcggtttcgacgccgaggggttgacctcggacctgacccagaacaagcgcgaa
cagctcatggcccgcatcaaggaaggcaagctgcgtttcctggtggccacggatgtggcc
gcgcgcggcatcgacatcccggaactctcccatgtcttcatgatggagccgccggaagac
ccggagtcctacgttcaccgggcgggccgcacgggtcgcgccggagccacgggcacggcc
atcaccctggtcgacgtcatccagaagatggagctggagcgtatcgccacgcggttcaag
atcaccttcgaggagatcaaggaccccaccgaagaggacgtggcggccatcattgaggag
cgtctcaccgcattgctggaaaagaaattccgcaagctcaccccgctgcagcgggagcgg
gcgtcccgcttcctgccgctggtggagaagtacgcctcggacgcggattccatgggactc
attgccatgctcctggacgagctttaccagtacaccctgcacggcaagcccgccgagcca
gtatccaccggtcagcctaaacgtgatcgagccgatcgggagcaaccccgtgaggacaag
ccgaagaagagccgcccgcggaagcgcaagcccaggaacggtggcggtcagcaggattcg
gaaggcggcagcagggatcgttcgcccaggaatcggcaggactcgcccgccgaggagaga
gccgagccccggcgcgaacgacgcgaagcgcccaaggaaccccgtcgtgaaaagagcgaa
gcccccaaggagcctcgccgcgagcccgcaacccgcagtgaagccgagtccggtgagagc
ggaggcgaggccaagccccgcccgcgtcgccgtcgtcccaggcgcagaaggcgttag
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