Pseudodesulfovibrio cashew: GM415_01865
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Entry
GM415_01865 CDS
T06353
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psel
Pseudodesulfovibrio cashew
Pathway
psel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM415_01865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psel03019
]
GM415_01865
Enzymes [BR:
psel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GM415_01865
Messenger RNA biogenesis [BR:
psel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GM415_01865
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QGY38933
UniProt:
A0A6I6JE79
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All DBs
Position
419018..420244
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AA seq
408 aa
AA seq
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MTFSSFSFDKRIDACVKACGYESPTPIQRQAIPLILQGHDVLGLAQTGTGKTAAFALPIL
QRLISSRSPRNASKVLVLAPTRELALQINENFTALSRDMGIRSCIVIGGVGMEPQIRACK
SSQIIVACPGRLVRLIARNAVHLNAIDTLVLDEADRMLDMGFLPDIKRVLAKLPAKRQNL
LFSATMPKSIRSFADRILNNPKTVKIDTATPVASIEHTFYSTHNKNKAALLEDLIKRSEH
QSMLIFTRTKHKAKNLSRKLSQIGHDSTFLQGNMSQGQREKALNGFRTGQFSIMVATDIA
ARGIDCDRITHVINYDMPDTVETYTHRIGRTGRAGRAGNAISLVTQDDADQMRALQRMLK
ISIEQPACAGVDGAETRFDEKSAAPQHKKPKNRYRGQRRKSQRRPEAA
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaccttttcctctttttcctttgacaagcgtatcgacgcctgtgtcaaagcttgcggc
tatgaatcaccaacccccatccaacgccaagccatcccgctgatcctccagggtcacgac
gtattgggcctggctcagacgggaaccggtaaaaccgccgcctttgcgttgcccatattg
caacgcctcatttccagccgatccccccgcaacgcttcgaaagttctcgtgcttgctccg
acaagggaattggcgctccagatcaatgagaacttcactgctctctcccgcgatatgggc
atacgcagctgcatcgtgatcggcggagtcggcatggagccgcagatcagggcctgcaag
tcttctcagatcattgttgcctgtccgggaagactcgtcaggctcattgcgagaaatgca
gtccacctcaatgcgatcgacaccctggtgctcgatgaagcggaccggatgctcgacatg
ggcttcctgcccgacatcaagcgagtcctggcgaagcttccggccaaaagacagaacctg
ctcttttccgcaaccatgcccaaatccattcgcagctttgccgatcgcatcctcaacaat
cccaaaacggtcaagatcgacacggcgacaccggtagccagcatcgagcacacgttctac
tcgacgcacaacaagaataaagcagccctgctcgaagaccttatcaagcgctccgagcac
cagagcatgctcatcttcacccgcaccaagcacaaggcgaaaaacctgtcacgcaagctg
tcccaaatcggccacgacagcacattcctgcaagggaacatgagccagggccagcgggaa
aaggcactgaacggttttcgtacgggccaattctcgatcatggtcgccacggacatcgcc
gcacggggaatcgactgcgaccgcataacgcatgtcatcaattatgatatgccggacacc
gtcgagacctatactcaccgcataggcaggaccggccgggcaggcagagccggcaatgcc
atcagtctggtgactcaggatgatgccgaccaaatgagggcactccagcggatgctgaaa
atctccatcgaacagcctgcatgcgctggcgtggatggagctgaaacaagattcgacgaa
aagagcgctgcccctcaacataagaagccgaagaaccgctatcgtggacagagacgtaaa
tcccaaagacgtcccgaagcggcttaa
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