Pseudodesulfovibrio cashew: GM415_02635
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Entry
GM415_02635 CDS
T06353
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
psel
Pseudodesulfovibrio cashew
Pathway
psel03030
DNA replication
psel03430
Mismatch repair
psel03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GM415_02635 (dnaE)
03430 Mismatch repair
GM415_02635 (dnaE)
03440 Homologous recombination
GM415_02635 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psel03032
]
GM415_02635 (dnaE)
03400 DNA repair and recombination proteins [BR:
psel03400
]
GM415_02635 (dnaE)
Enzymes [BR:
psel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GM415_02635 (dnaE)
DNA replication proteins [BR:
psel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GM415_02635 (dnaE)
DNA repair and recombination proteins [BR:
psel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GM415_02635 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF6282
Motif
Other DBs
NCBI-ProteinID:
QGY39067
UniProt:
A0A6I6JG88
LinkDB
All DBs
Position
601721..605266
Genome browser
AA seq
1181 aa
AA seq
DB search
MAEFVHLHVHTEYSLLDGAIRIKDLLSRAKDLGMPAVAITDHGSMYGAVAFYMAAMDMGI
KPIIGCEVYVAPGDVDEEDAHLKKNKPGGYHLVLLAKNQRGYKNLIKIVSGGYLDGFYYK
PRTCKNELKKHSEGLIALSACLAGEVPRKLMNEGLDEGVAMAREYEAIFPGNFYLELQDN
GIGKQTRLNDLLIQCAEKTGLPLVATNDCHYLTAEDYEAHDTLLCIQTQTTVDAEKRFRM
DTRELYFKTPEEMEQAFAHVPEAIANTQRIAERCNLEIELGNYYFPEYELSADVSNLDEE
FIKLCRAGLKKRLETITYEVDEQKYWDRLDYELGVITEMGFPAYFLIVQDFINWAKDNRI
PVGPGRGSAAGSIVAWSLKITNLDPIPYDLLFERFLNVERVSMPDIDVDFCERRRLEVVK
YCAQKYGHDRVAQITTFGTMKTKAVIKDVGRALGMTFGETDRIAKLIPDDPGVMAKLLGV
EKAKINVPNAVKGVVELGDMVATDPKVEKLIDISTRLEGLCRHASTHAAGVVISDKPMTE
YLPLYKGKKEEIVTQFDMKKVEKVGLIKFDFLGLRTMTVIEDCLDIIREQGKDAPNLDTL
HLDDPDTFAIFAKGDTDGVFQVESSGMRKYLRMLRPDCFEDIVAMLALYRPGPLGMIGAH
GVSMVDEFIMRKHGDIDVTYPHPSLEDTLKPTYGVMVYQEQVMATAMTIANYSLGEGDLL
RRAMGKKIAEEMAKQRSRFLEGARENKIPEKTANEIFDTMEKFAAYGFNKSHSAAYALIS
YHTAYLKAHFPVEFMAALMSSEMNNTEKIIMYINACRDMDIAVRQPNINAGMARFSVREG
EILFAMAAIKNVGEEAINEIVVERNEGGTFKDIFDFCERVNLRRVTKRVLESLIKAGALD
CFDCPRAALMEDLEKAVALGQKKAKEKESGMLNMLDMLGGDGGSKSEAITPTCSSCEEYD
DKEKLQLEKEVLGFFLSGHPLLAYRQDMARLRTSTLDECKSIPNGTEVRVAVIIPDFKQI
LTRKGDPMAFCTAEDLTTSGEITMLPNVWEEAREKVEADRPLFVQGRIDLREEPGQEEAP
KTAKILAEKVLFLADAAHGSDKPVPLWIGEKHATDEHLDALKVILKRYPGTTAVNLGVIT
RESVVNLKLGNGWQVIPSREFWKDVEKWQNGDALRHLAAPK
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaattcgttcatcttcacgtccataccgagtacagtctgctcgacggcgccatt
cgcatcaaggacctgctctccagggccaaggacctgggcatgccagccgtggccataacc
gaccacgggtccatgtacggggccgtggccttctacatggcggccatggatatgggcatc
aagccgatcatcggttgcgaggtgtacgtggcccccggcgatgtggacgaggaagacgcg
catctcaaaaagaacaagcccggcggctatcacctggtgcttctggccaagaaccagcgc
ggctacaagaacctgatcaagatcgtgtccggcggctacctggacggcttctactacaag
ccgcgcacctgcaagaacgagctgaagaagcactcggaggggctcatcgccctgtccgcc
tgcctggcgggcgaggtgccgcgcaagctgatgaacgaagggctggacgaaggcgtggcc
atggccagggagtacgaggccatcttccccggcaacttctacctggagcttcaggacaac
ggcatcggcaagcagacgcgcctgaacgatctgctcatccagtgcgcggaaaagaccggc
ctgcccctggtggccaccaacgactgccactacctgaccgccgaggactacgaggcacac
gacaccctgctctgcatccagacccagaccacggtggacgcggaaaaacggttccgcatg
gacaccagggaactctatttcaagactcccgaggagatggagcaggccttcgcccacgtg
cccgaggccatcgccaacacccagcgcatcgccgagcggtgcaacctggagatcgagctc
ggcaactactatttccccgagtatgagctctccgccgacgtctccaacctggacgaggag
ttcatcaagctctgccgcgcgggcctcaagaagcggctggagaccatcacctacgaggtg
gacgagcagaaatactgggaccgcctggactacgaactgggcgtcatcaccgagatgggc
ttcccggcctacttcctcatcgtccaggacttcatcaactgggccaaggacaaccgcatc
ccggtgggtccgggccgcggctcggcggcaggttccatcgtggcctggtccctcaagatc
accaacctcgaccccatcccctacgacctgctcttcgagcgcttcctcaacgtggagcgc
gtgtccatgccggatatcgacgtggacttctgcgaacggcggcggctggaggtggtcaag
tactgcgcccagaagtacggccacgaccgggtagcgcagatcaccaccttcgggaccatg
aagaccaaggcggtcatcaaggacgtgggccgcgccctgggcatgaccttcggcgagaca
gaccgcatcgccaagctcatcccggacgaccctggggtcatggccaagctgctgggcgtg
gagaaggccaagatcaacgtgcccaacgcggtcaagggcgtggtcgagctgggcgacatg
gtcgccaccgaccccaaggtcgaaaagctcatcgatatttcaacgaggctggaggggctc
tgccgccacgcctccacccacgcggcgggcgtcgtcatctcggacaagcccatgaccgag
tatctgccgctctacaagggcaaaaaagaggaaatcgtcacccagttcgacatgaagaag
gtcgaaaaggtcggactgatcaagttcgacttcctggggctgcgaaccatgacggtcatc
gaggactgcctggacatcatccgcgagcagggcaaggacgccccgaacctggacaccctc
cacctggacgacccggacaccttcgccatcttcgccaagggcgacaccgacggcgtgttc
caggtcgagtcctcgggcatgcgcaagtatctccgcatgctccgcccggactgcttcgag
gacatcgtggccatgctcgccctctaccgtccgggccccctgggcatgatcggcgcccac
ggcgtaagcatggtggacgagttcatcatgcgcaagcacggcgacatcgacgtgacctac
ccgcacccctcgctggaggacaccctcaagcccacctacggcgtcatggtctatcaggag
caggtcatggcaacggccatgaccatcgccaactactccctgggcgagggcgacctgctc
cgccgcgccatgggtaagaagatcgccgaggagatggccaagcagcgctcccggttcctc
gagggcgcacgggaaaacaagatccccgagaagaccgccaacgaaatcttcgacaccatg
gagaagttcgcggcatacggcttcaacaagtcgcactcggccgcctatgcgctcatctcc
taccacaccgcctacctcaaggcccacttcccggtggagttcatggccgccctgatgtcc
tcggaaatgaacaacaccgagaagatcatcatgtacatcaacgcctgccgcgacatggac
atcgcggtccggcagccgaacatcaacgcgggcatggcgcgtttctcggtgcgggagggc
gaaatcctcttcgccatggccgccatcaagaacgtgggcgaagaggccatcaacgagatc
gtggtcgagcgcaacgagggcggcaccttcaaggatattttcgacttctgcgagcgtgtc
aacctcaggcgggtgaccaagcgcgtgctcgaatcgctgatcaaggccggagcccttgac
tgcttcgactgcccacgcgcagccctgatggaggacctggaaaaagcggtggccctaggc
cagaaaaaggccaaggaaaaggagtccggcatgctcaacatgctggacatgctcggcggc
gacggcgggagcaagtccgaggcgatcacgcccacctgctcctcctgcgaagagtatgac
gacaaggaaaagctccagttggagaaggaggtcctcggcttcttcctgtccgggcacccc
ctgctggcctaccgccaggacatggcacggctgcgcacctccaccctggacgagtgcaag
tccatacccaacggcaccgaggtccgcgtggccgtaatcatcccggacttcaagcaaatt
ctgaccagaaagggcgaccccatggccttctgcactgcagaggacctgacgacctcgggc
gagatcaccatgctgcccaacgtctgggaggaggcccgggagaaggtcgaggcggatcgc
ccgttgttcgtgcagggacgcattgacctgcgagaggagccgggccaggaggaagcaccc
aagacggccaagatcctggcggaaaaagtcctgttcctggccgacgcggcccacgggtcg
gacaagccggtccccctgtggattggcgaaaaacacgccacagacgagcaccttgatgcg
ctcaaggtcatcctcaagcgctaccccggcaccactgccgtgaacctcggcgtgatcacc
agggaatcggtggtcaacctcaaactgggcaacggctggcaggtcattcccagccgggag
ttctggaaagacgtggaaaagtggcaaaacggagacgccctgcgccacttggccgcccca
aaatag
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