Pseudodesulfovibrio cashew: GM415_03565
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Entry
GM415_03565 CDS
T06353
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
psel
Pseudodesulfovibrio cashew
Brite
KEGG Orthology (KO) [BR:
psel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
psel03032
]
GM415_03565 (topA)
03400 DNA repair and recombination proteins [BR:
psel03400
]
GM415_03565 (topA)
Enzymes [BR:
psel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
GM415_03565 (topA)
DNA replication proteins [BR:
psel03032
]
Prokaryotic type
DNA Topoisomerases
GM415_03565 (topA)
DNA repair and recombination proteins [BR:
psel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
GM415_03565 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Lar_restr_allev
Zn_ribbon_RPB9
ADK_lid
Toprim_4
Zn_ribbon_recom
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QGY39237
UniProt:
A0A6I6JGQ0
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Position
complement(811948..814386)
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AA seq
812 aa
AA seq
DB search
MPKDLIIVESPAKVKTISKFLGKDYIVDASVGHVRDLPTRDLGVDEEHDFTPQYEVIKGK
EEVVKRLKAAAKKADTVYLAPDPDREGEAIAWHVAELIKPVNDKIRRIQFNEITSRAVKE
ALEHAQDLNENLFDSQQARRILDRLVGYKISPILWKNVKRGISAGRVQSVALKILVEREK
ERRAFKADEYWPFKVLLEGKNPPPFWMDLHKLEDKAVKPGVNHVGTQSEAEALQEALENG
EFKVDSVQEKQRKRSPLPPYITSTLQQDANRRMGYSAKRTMSIAQRLYEGVELGARGTTA
LITYMRTDSVRVAKDAQDAAKELILDRFGADYYPPKTRNFKSKGGAQDAHEAIRPVDVTI
VPEDVKQYLPGEQYRLYRLIWQRFVASQMAVATFWDTTVLVSAPRTLWRAKGERLLFPGF
LAAMDKAGSEGDTELPKLDEGDVLKLNELKKEQKFTQPPPRYSEASLVKTLEELGIGRPS
TYAAIISTLLDREYARQEEKRFVPTELGFTVSDQLSEHFQALMDVGFTAQMENLLDDVAA
GKQDWVKLLKDFGGDFYPTLDKARTEMGRSQQVTDIKCENCGKPMAIKFGRTGEFLGCTG
FPTCRTIKNFTRDEEGNIQIVEREKPEDTGVKCEKCGRPMAIKQSRRGEFLGCTGYPDCK
NIVNFERDEDGKIKVVESEKPKVVGTCPECGGELLLKKARTGSRFIACSNYPDCTYAAPF
STGVPCPREGCEGELVEKSSRRGKLFYSCSTYPKCDYAVWNWPINEPCPKCGHPILTRKT
TKDKGEHIACPKKGCGYTRDIDEPAGQEGEKE
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagatttgatcattgttgagtcccccgccaaagtgaagaccatctccaagttc
ctggggaaggactatatcgtggacgcctccgtgggccacgtgcgcgacctgcccacccgg
gatctcggcgtggacgaggagcacgatttcaccccgcagtacgaggtgatcaaaggcaag
gaagaagtggtgaaacgcctcaaggcggcggccaagaaggccgacaccgtctacctcgcc
cctgacccggaccgcgaaggagaggccatcgcctggcatgtggccgagctgatcaagccg
gtcaacgacaagatccggcgcatccagttcaacgaaatcacttcccgcgccgtgaaggaa
gccctggaacacgcccaggacctcaacgagaacctgttcgactcccagcaggcgcgccgc
atcctggaccgcctggtgggctacaagatttcccccatcctctggaagaacgtgaagcgc
ggcatctccgccgggcgcgtccagtccgtggcgctcaagatcctggtggagcgcgaaaag
gaacgccgcgccttcaaggccgacgaatactggccgttcaaggtgctcctggagggcaag
aacccgccgcccttctggatggacctgcacaagctggaggacaaggcggtcaagcccggc
gtcaaccacgttggcacccagtccgaggccgaagccctgcaggaagccctggagaacggc
gagttcaaggtggactccgtgcaggagaagcagcgcaagcgctcgcccctgccgccgtat
atcacctccacactccagcaggacgccaaccgccgcatgggctactcggccaagcggacc
atgtccattgcccagcgcctttacgaaggtgttgagctgggagcccggggcaccaccgcg
ctgattacctacatgcgtaccgactccgtgcgcgtggccaaggacgcgcaggacgcggcc
aaggaactcatcctcgaccggttcggcgctgactactacccgccgaagacccgcaatttc
aaatccaagggcggcgcacaggacgcgcacgaagccatccgtccggtcgacgtgaccatc
gtgcccgaagacgtcaagcagtacctccccggcgaacagtaccggctctatcggctcatc
tggcagcgcttcgtggcctcgcagatggccgtggccaccttctgggacaccacggtcctg
gtctcggccccgcggaccctgtggcgcgccaagggcgagcggctgctcttccccggcttt
ctggccgccatggacaaggccggctccgagggcgacaccgaattgcccaagctggacgag
ggcgacgtcctgaagctcaacgagctgaaaaaggaacagaagttcacccagccgccgccg
cgttactcggaagcctcgctggtcaagaccctggaggagctcggcatcgggcggccgtcc
acctacgcggccatcatctccaccctcctggaccgcgagtacgcgcgtcaggaggagaag
aggttcgtgcccaccgagctcgggttcacggtctcggaccagctttccgaacattttcag
gcgctcatggacgtgggcttcaccgcccagatggagaacctgctggatgacgtggccgcg
ggcaagcaggactgggtcaagctgctcaaggatttcggcggcgacttctatcccaccctg
gacaaggcgcgcaccgagatggggcgctcccagcaggtcacggacatcaagtgcgagaac
tgcggcaagcccatggccatcaagttcggccggacaggcgagttcctgggttgcaccggc
ttccccacctgtcggaccatcaagaacttcacccgcgacgaggaaggcaacatccagatc
gtggagcgggaaaagcccgaggacaccggcgtcaagtgcgagaagtgcggacggcccatg
gccatcaagcagtcccgccgcggcgagttcctgggctgcaccggctacccggactgcaag
aacatcgtcaatttcgagcgcgacgaggacggcaagatcaaggtcgtcgagtcggaaaag
cccaaggtggtcggcacctgccccgagtgcggcggcgagctgctgctcaagaaggcgcgc
accggctcccgattcatcgcctgctccaactacccggactgcacctatgccgcgccgttc
tccacgggcgttccctgcccgcgtgagggctgtgaaggcgagctggtggaaaagtcctca
cgccggggaaagctcttctattcctgctccacctaccccaagtgcgactacgcggtctgg
aactggcccatcaacgagccgtgccccaagtgcggccatcccatcctgacccgcaagacc
accaaggacaagggcgagcacatcgcctgtcccaagaaaggctgcggttatacgcgggac
atcgacgagcccgcaggccaggaaggggaaaaggaatag
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