Pseudodesulfovibrio cashew: GM415_04370
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Entry
GM415_04370 CDS
T06353
Name
(GenBank) HD domain-containing protein
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
psel
Pseudodesulfovibrio cashew
Pathway
psel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GM415_04370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psel03019
]
GM415_04370
Enzymes [BR:
psel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
GM415_04370
Messenger RNA biogenesis [BR:
psel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GM415_04370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
tRNA_NucTran2_2
PolyA_pol_RNAbd
MIOX
wHTH-PRTase_assc
CNV-Replicase_N
Motif
Other DBs
NCBI-ProteinID:
QGY39387
UniProt:
A0A6I6JH32
LinkDB
All DBs
Position
990771..992105
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AA seq
444 aa
AA seq
DB search
MSQPFKDAVGFCKTIMRNGFDAYVVNVRLQALTLSEAGNEKELDICTDAGLAELQKYFPS
LTASDDKGIVGFLTEGDTTYYFYAADVDDASHLSEAISTMTPRLLKRLEQRGDIPLSAVC
PFIPKAKDTYADFADFAEGRIRFKGDPDQALKKDYSLAYRALRFAANFDKEIAPNSWTAI
VRNAPQVLEFVPMADFLDEWHKVEAESMYRFFALLFDSMLLHGLIPEIAALSRIKQIRNP
EEGAEETVLQHTLDVMKAYPEELPYDWKGTVACLFHDLGKLYTAEYYDEQWHFLQHHRVG
AKAARQVLKRLRFEEQDIDLICDLVQNHMRPHFMLTDKGIRRLRSLDEYPRIMEMVKADI
KARDGSWREYNHNLKMAERADIPDNEIEPMLDGNQIMEMTELNPGPVIGEIRQQLLKAQI
AGSVNSMEEAEAFVHTYVAKNKIQ
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcctttcaaagacgcggtaggattttgcaagaccatcatgcgcaacggcttt
gacgcctacgtggtcaacgtccgtttgcaggcgcttaccttgagcgaagccggcaatgaa
aaggagctggacatctgcaccgacgccggcctggcggaattgcagaagtatttccccagc
ctgacggcttccgacgacaagggtatcgtcggattcctgaccgagggcgacaccacctat
tatttctacgccgccgacgtggacgacgcctcgcacctgagcgaggccatctcgaccatg
actccccggctgctcaagcggctggaacagcgcggtgacattccgctctcggcggtctgc
ccgttcatccccaaggccaaggacacctatgcggacttcgctgacttcgccgaaggcaga
atccgcttcaagggcgacccggaccaggcgctgaaaaaggactattccctggcctaccgg
gccctgcgcttcgccgcgaacttcgacaaggagatcgcgcccaactcctggacggccatc
gtacgcaatgcgccgcaggtcctggagttcgtgcccatggccgactttctggacgagtgg
cacaaggtcgaagcggagtccatgtaccgcttcttcgccctgcttttcgattccatgctg
ctgcacggcctgatcccggagatcgcggccctgtcgcggatcaagcagatccgcaacccc
gaggaaggagccgaggagaccgtgctccagcacaccctggacgtcatgaaggcctacccc
gaggagctgccctacgactggaagggcaccgtggcctgcctcttccacgacctcggcaaa
ctctacacagccgaatattatgacgagcagtggcacttcctgcagcaccaccgggtcggg
gccaaggccgcccgccaggtgctcaagcgactgcgcttcgaggagcaggacatcgacctg
atctgcgatctggtccagaaccacatgcgcccgcacttcatgctcacggacaagggcatc
cggcgactgcgctccctggacgaatatccgcgcatcatggagatggtcaaagcggacatc
aaggcccgcgacggctcctggcgcgagtacaaccacaacctgaagatggccgagcgcgcc
gacatcccggacaacgagatcgaacccatgctcgacggcaaccagatcatggaaatgacc
gagctcaatcccggcccggtcatcggcgaaatccgccagcagttgctcaaggcccagatc
gccggttcggtcaactccatggaagaggccgaggcctttgtccacacgtacgtggccaag
aacaagattcagtag
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