Pseudodesulfovibrio cashew: GM415_11020
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Entry
GM415_11020 CDS
T06353
Name
(GenBank) RNB domain-containing ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
psel
Pseudodesulfovibrio cashew
Brite
KEGG Orthology (KO) [BR:
psel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
psel03016
]
GM415_11020
Enzymes [BR:
psel01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GM415_11020
Transfer RNA biogenesis [BR:
psel03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
GM415_11020
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Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
QGY40632
UniProt:
A0A6I6JK06
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All DBs
Position
complement(2462800..2464854)
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AA seq
684 aa
AA seq
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MAKTTFLTATVRPGTVVEFMHGDQPQLAWVLEESSGKLRILTITKREMKLPAARLLPWHG
PVCSEEVNRQEIQDILNSHQEKRGEIQAGIDVMELWELAQGEVETASLSWFAGLLWESPG
PDETAALGRAMLGAKTHFKFRPPNFEVWSAEQVEKRMREKAEEKAREAVTAAGQTLLQEL
WGAHSQGRKPRLPALEPELAGSLETILRHQVADTLDDNERKIWTAIAKGLPDVPHLGLLL
AQSWGVLPPHHNYLLDTAEYAWGNEWSETFNNEISSIESTFSNHRMEPEAEEFLSIDAAT
TRDIDDAFRIERDGGGYKLSLALARPDAHWEFGSPLDRAVMHRATSLYLPEGTAHMLPEQ
FGTGLYSLVAGEARPALVTDFLLDEEGKLLGVTPRTAWVTVSANATYEDTDEAIREERDQ
QLVLAHQLAEKLIQRRIEAGACVIRKPEPVVTVEEGEAKPEVSIVLKEECPRSELVVSEF
MILANSGLALWARDHDVPLLHRTQDIALPQESAGIFTEPAKILRAVKLLLPPVLETTPKR
HAALAVPAYAPITSPLRRYTDFINMAQVASFLDSGVPRLDIEELDRLAIHLNLRIKTVSA
VQRFRPRYWKLVYLAARRREFQPAVLVDDNGPLATLAMPHLQVNVRAPKKLLGDKLYPGQ
RFEINFSRVDPLTNEIRLGEALEE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaacgacctttctaaccgcgaccgttcgccccggcacggtggtggaattcatg
cacggcgaccaaccccaactggcctgggtgctggaggagtcgtcgggcaaactccgcatt
ctcaccatcaccaaacgggagatgaagctgcctgccgcccgtctcctgccgtggcatggc
cctgtgtgctcggaagaagtcaatcgccaggagatacaggacattctcaattcccatcag
gagaagcggggagaaatccaggcagggatcgacgtaatggagttgtgggaactcgcccaa
ggggaagtggagacagcttctctttcctggttcgcagggctgctctgggaatccccgggc
ccggacgaaaccgccgccctgggccgcgccatgctgggggccaaaacccacttcaagttt
cggccgcccaatttcgaggtctggtccgccgaacaggtcgaaaaacggatgcgtgaaaag
gccgaggaaaaggcccgcgaagccgtgaccgccgccggacaaaccctgctccaggaactc
tggggcgcacacagccagggacgcaagccgcgtctcccggccctggagccggaactggcc
ggcagcctggagacgatcctcaggcatcaggtggcggacaccctggacgacaacgaacgc
aagatttggaccgccatcgccaaggggctgccggatgtgccgcacctcggcctgctcctg
gcccagtcctggggagtcctccctccccaccacaactaccttctggatacggccgagtat
gcgtggggcaacgagtggtcagaaacgttcaacaatgaaatcagctcaatagaaagcacc
ttttccaatcatcgaatggaaccagaggcggaagagtttctctccatcgacgcggccacg
acccgcgacatcgacgacgccttccgcatcgagcgggatgggggcggctacaaactctcc
ctcgccctcgcaaggcccgacgcgcactgggagttcggctctcctctggaccgggccgtc
atgcaccgggccacctcgctctacctgcccgaaggcacggcgcacatgctgcccgagcag
ttcggcaccggcctctacagcctggtcgccggagaagccagacccgcactcgtaacggat
tttctcctggacgaagaaggcaagctcctgggcgtcaccccgcgcacggcatgggtcacg
gtgtcggccaacgccacctacgaggatacggacgaggccattcgggaggagcgcgatcag
caactggtcctggcgcatcaactggcggaaaagctcatccagcggcgcatcgaggccggt
gcctgcgttatccgcaagcccgaacccgtggttaccgtggaggaaggcgaggccaagccc
gaggtcagcatcgtcctgaaagaggaatgcccacgctcggaactggttgtcagcgaattc
atgatcctggccaattccggtctggcgctctgggcaagggatcatgacgtccccctgctt
caccggacccaggacatcgccctgccccaggagtcggcgggcatcttcacggaaccggcc
aagatcctgcgcgcggtcaagctgctccttccgccggtcctggagaccacgcccaaacgc
cacgccgcacttgcggtcccggcctacgcgcccatcacctcgccgctcaggcgctatacg
gatttcatcaatatggcccaggtggcctccttcctcgactccggcgtcccgcgcctggac
atcgaggaactggacaggctggccatccacctgaacctgcgcatcaagaccgtaagcgcg
gtgcagcgattccgcccccggtactggaaactcgtctacctggccgcgcggcgcagggaa
ttccagcccgccgtgctggtggacgataacgggcccctggccaccctggccatgccccac
cttcaggtcaacgttcgcgcaccgaagaaactgctcggtgacaagctctacccgggccag
cggttcgagatcaacttcagccgcgtcgaccccctgaccaatgaaatccgtttgggagaa
gccctggaggagtag
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