Pseudodesulfovibrio cashew: GM415_11670
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Entry
GM415_11670 CDS
T06353
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
psel
Pseudodesulfovibrio cashew
Pathway
psel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
psel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GM415_11670 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
psel03021
]
GM415_11670 (rpoC)
03400 DNA repair and recombination proteins [BR:
psel03400
]
GM415_11670 (rpoC)
Enzymes [BR:
psel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GM415_11670 (rpoC)
Transcription machinery [BR:
psel03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GM415_11670 (rpoC)
DNA repair and recombination proteins [BR:
psel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GM415_11670 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QGY40752
UniProt:
A0A6I6JKB0
LinkDB
All DBs
Position
2595499..2599647
Genome browser
AA seq
1382 aa
AA seq
DB search
MTLDDLFTLRGAPNQTAQGRNLKAIQISIASPETIREWSYGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDITMADLEKVLYFDSFIVLDPGETPLKTHQVVSEDQYFQVIDHFGED
ALKVGMGAETVRTMLEALDLPTLRTELREESQTTRSQTKKKKITKRLKIVEAFLESGNKP
EWMIMEVIPIIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPEIIIRN
EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKLHQCGLPKKMALELFKPFIYAELEKRELATTIKSAKKMVEREDLVVWDILED
VVREYPIMLNRAPTLHRLGIQAFEPLLVEGKAIQLHPLVCSAYNADFDGDQMAVHVPLSV
EAQIECRVLMMSTNNILSPSNGSPIINPSQDIVLGLYYLTTPRSFELGEGMCFSDREEVI
AAYDHGVLGLHARIKVRIDGKLEETTTGRVIVSELIPDEVPFEMVNCVLNKKNIAALVSG
SYRTAGTKATVILCDKIKDLGYEYGARAGVTIGVKDLKIPDAKAGMLETAHAEVDEIENQ
FQDGIITRTEKYNKVVDVWTKVTNDISNEMMQEMSTDVLTDPKTGKTEVNSSFNPIYMMA
TSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITASFREGLSVLQYFISTHGARKGLADT
ALKTANSGYLTRRLVDVVQDVTVSEIDCGTVDGLELTHLIKGGEIKQRLHERVLGRVTMF
DVYNEDTGELIIPGNTIIDSAYAKKLDASGVNSITIRSGLTCKAKQGVCAMCYGRDLARG
HLVNVGETVGIIAAQSIGEPGTQLTMRTFHIGGTASKEIESSSIEAQHNGRVVTSRMRTV
VNSEGHKMVLGKSCQVGIVDDQGREREKYVLPSGARLLVDDGQDVKKGSPLAEWDPYMEP
FIVDVSGAIKFKDIIEGKTVQEDRTSKASVTIMEYRTTNYRPAVGILDEDGKAVQRPGTD
IDANFAMPVGAILMVKDGDQVKAGDVIARKPRESSKTKDIVGGLPRVAELFEVRKPKDLG
VVSSIDGIVTFGPETKGKRKVVVTPEVGDSKEFLIPKGKHITVQESDFVEAGDLLTEGSP
ELHDILRIKGEKYLARYLVEEIQDVYRFQGVNINDKHIEIIVRQMLKKVSILEPGSTSFL
IGEQVDKQRFMEENAKVMEEGGKPAVAETLVLGITQASLSTDSFISAASFQETTKVLTEA
SLKGKSDQLRGLKENVIVGRLVPAGTGFRKYIDTDIVVPDQPERPDKFLEELEENPLLVE
TE
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atgacgttggacgatctgttcaccttgcgtggagcgccgaatcagacggcccagggccgc
aacctgaaggctatccagatatccatcgcctcgcccgagaccattcgcgaatggtcctac
ggcgaagtgaagaaacccgagaccatcaactaccggaccttcaagcccgagcgcgacggc
cttttttgcgccaagatcttcgggcccgtgaaggactacgagtgcaactgcggcaagtac
aagcgcatgaagcatcgcggcatcgtctgcgagaagtgcggcgtcgaggtcatcgcctcc
aaggttcgccgcgagcgcatgggccacatcgaattggccgcgcccgttgcccacatctgg
ttcctcaagactctgccttccaagatcggcacgctgctcgacataaccatggccgacctg
gagaaggtgctgtacttcgattccttcatcgtgcttgatccgggcgagaccccgctcaag
acgcatcaggtagtgtccgaagaccagtacttccaggtcatcgaccacttcggcgaagac
gccttgaaggtcggcatgggcgccgagacggtccgcaccatgctggaagccctggatctg
ccgaccctgcgtaccgaactgcgtgaggagtcccagactacccggtctcagaccaagaaa
aagaaaatcaccaagcggctgaaaatcgtcgaggctttcctcgagtccggcaacaagccc
gagtggatgatcatggaagtgattcccatcattccgcccgagctgcgtcctctcgtcccc
ctggacggcggccgtttcgccacctccgacctcaacgatctctaccgtcgcgtcatcaac
cgcaacaaccgcctgaagaggctgttggagctgggtgcgcccgagatcatcatccgcaac
gaaaagcgcatgctccaggaagccgttgacgccctgttcgacaacggtcgccgtggccgc
gccatcaccggcaccaacggtcgcccgctcaagtcgctgtccgacatgatcaagggcaag
cagggccgtttccgccagaacctgctcggcaagcgtgtcgactactccggccgttcggtc
atcgtggtcggtccgaagctgaagctgcatcagtgcggcctgcccaagaagatggccctc
gagctcttcaagccgttcatctacgccgagctggaaaagcgcgaactggccaccaccatc
aagtccgccaagaaaatggtcgagcgcgaagacctggtcgtctgggatatcctggaagac
gtggtccgcgaatacccgatcatgctcaaccgtgcaccgaccctccaccgcctgggcatc
caggcctttgagccgctgctcgtggaaggcaaggccattcagcttcacccgctggtttgc
tccgcctacaacgcggacttcgacggtgaccagatggccgtgcacgtgcccctgtcggtg
gaggcgcagatcgaatgccgcgtgctcatgatgtccaccaacaacatcctgagcccctcc
aacggttcgcccatcatcaacccctcgcaggacatcgtcctcggtctgtactacctgacc
acgccccgttccttcgaactgggcgagggcatgtgcttctccgaccgcgaggaggtcatc
gccgcctacgatcacggcgttctgggcctgcacgcacgcatcaaggttcgcatcgacggc
aagctggaggagaccaccaccggccgcgtcatcgttagcgagcttatcccggacgaagtg
ccgttcgagatggtcaactgcgtgctcaacaagaagaatatcgcagccctggtctccggt
tcctaccgcacggcaggcaccaaggccacggtcatcctgtgcgacaagatcaaggacctt
ggttacgaatacggcgctcgcgccggcgtgaccatcggcgtcaaggacctcaagattccc
gacgccaaggccggtatgcttgaaaccgcccacgccgaagtggacgagatcgagaaccag
ttccaggatggtatcattacccggaccgagaaatacaacaaggttgtcgacgtctggacc
aaggttaccaacgacatctccaacgagatgatgcaggaaatgtccaccgacgtgctgacc
gatcccaagaccggcaagaccgaggtgaactccagcttcaaccccatctacatgatggcc
acctcgggtgctcgaggcaaccaggaccagatgcgtcagttggccggtatgcgcggtctg
atggccaagccttcgggcgagatcatcgagacgcccatcaccgcctccttccgcgaaggt
ctgtcggttctccagtacttcatctccactcacggcgctcgtaagggtctcgcggatacc
gcgctcaagaccgccaactccggttaccttacccgccgcctggtcgatgtcgttcaggac
gtgaccgtctccgagatcgactgcggcaccgttgacggcctggagctgacccacctgatc
aagggtggtgaaatcaagcagcggctgcacgaacgcgtgctcggccgcgtgaccatgttc
gatgtctataatgaagacaccggcgaattgattattcccggcaacacgatcatcgattcg
gcgtacgccaagaagctcgacgcttccggcgttaactccatcaccattcgttccggcctg
acctgcaaggccaagcagggcgtttgcgccatgtgttacggccgtgacctggcccgaggt
catctggtcaacgtcggtgagaccgtcggcattatcgccgcccagtccatcggcgagccc
ggaacccagctgaccatgcgtaccttccacattggtggtaccgcatccaaggaaatcgag
tcctcatccatcgaagcccagcacaacggccgggtcgtcacttcgcgcatgcgtaccgtc
gtcaactccgaagggcacaagatggtgctcggcaagagctgtcaggtcggcatcgtggac
gatcagggccgcgagcgggaaaaatacgtgctgccttcgggtgcacgcctgctggtggac
gacggacaggacgtcaagaagggctccccgctggccgagtgggatccgtacatggaaccc
ttcatcgtcgacgtttccggcgccatcaagttcaaggacatcatcgaaggcaagaccgtg
caggaggatcgcacctccaaggcgtccgtcaccatcatggagtatcgcaccaccaactac
cggcccgcggtcggcattctggacgaggacggcaaggccgtgcagcgtcccggtaccgac
atcgacgccaacttcgccatgccggtgggcgccattctgatggtcaaggacggcgatcag
gtcaaggcgggtgacgtcatcgcgcgtaagccgcgtgagtcctccaagaccaaggacatc
gtcggtggtctgcctcgcgtcgccgagctgttcgaggtgcgcaagcccaaggatctgggt
gttgtctcctccattgacggcattgtcaccttcggtcccgaaaccaagggcaagcgcaag
gtcgtggtcactcccgaggtgggcgactccaaggaattcctcattcccaagggcaagcac
atcacggttcaggagtccgacttcgtggaagcgggcgatctgctgaccgaaggctctccg
gagctgcacgacatcctgcgcatcaagggcgagaagtacctggcccgctacctggtcgag
gaaatccaggacgtgtaccgcttccagggcgttaatatcaacgacaagcacatcgaaatc
atcgtccgccagatgctgaagaaggtttcgatcctggagcccggttccacctccttcctc
atcggcgagcaggtggacaagcagcggttcatggaagagaacgccaaggtcatggaagag
ggcggcaagcccgctgtcgcagagaccctggttctgggtatcacccaggcatctctgtcc
acggactccttcatctccgcagcctccttccaggagaccaccaaggtgctgaccgaggct
tcgctcaagggcaagtccgaccagctgcgcggcctgaaggagaacgtcattgtcggccgt
ctcgtgcctgcaggaaccggtttccgcaagtacatcgacaccgacatcgtggtcccggat
cagcccgagcggcccgacaagttccttgaggagcttgaggagaatccgcttctggtcgag
acggagtaa
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integrated database retrieval system
