Pseudomonas sp. MRSN12121: TO66_03550
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Entry
TO66_03550 CDS
T03702
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
psem
Pseudomonas sp. MRSN12121
Pathway
psem03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
psem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
TO66_03550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psem03400
]
TO66_03550
Enzymes [BR:
psem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
TO66_03550
DNA repair and recombination proteins [BR:
psem03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TO66_03550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_30
AAA_11
AAA_25
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AJO76411
UniProt:
A0A0C5DYK7
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All DBs
Position
812612..816304
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AA seq
1230 aa
AA seq
DB search
MSRQAPLALAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGGEEAGFGRELLPPQILV
VTFTDAATKELRERIRTRLAEAARFFRDETAAPDTLIAELREQFAVEQWPGCASRLDIAA
QWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMQGD
ALNWVRANWGGPAALLPRVRALFGSEPEAREERTPAQLIEACLQERRSALVQLKAPWRQW
AAELREICLQGVASKAVDGRKMQARYFEPWFEKIEAWAADDSIEQLDIGTGFSRLTPDGM
AEAWKGEAPSHPALEAMSSLKAALDALPSPDAAVLQHAARWVGARFEEEKRRRAEMGFDD
MLLRLDAALQAEGGERLATLIREQFPVALIDEFQDTDPVQYRIFESIYRIEDNSPETGLF
LIGDPKQAIYAFRGADIYTYLRARQATSGRLHTLGTNFRSSHAMVKAVNHVFERAECREQ
GRGAFLFREPGGENPVPFLSVASQGRKEQLQADGQGVPALNIWHLPAEQPISGALYRQQL
AATCASEIVALLNGGQQGRVGFMRDGQPFKGVLPADIAILVRDGKEAQAVRGELAARGVR
SVYLSDKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALASITLGLPLVELERLNQDELA
WEGRVMQFRGYRLIWRTQGVLPMLRRLLHDFQLPQALIARSDGERVLTNLLHLCELLQQA
AGELDGEQALIRHLAEHLASSAQASEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI
CSAKPVDGSRLPLHYHDESGKAQMTLRPTPELIAQADDERLAEDLRLLYVALTRAQHACW
LGVADLKRGNHSSSVLHLSALGYLLGGGARLSESAGLLRWLQDLQQDCAAVSVSELPNPS
GMRFHPPRNDATLLAPLEPKRRAAENWWIASYSALRISDTLGAGNTEAPESPQAQKLFDD
ERLDPDAPREVMASGADIHRFPRGPNPGTFLHGLLEWAGDEGFGADPAAIEDAIARRCNR
RGWQGWIRTLSDWLGHLLRLPLPAGAGQPPVVLAELARYRVEMEFWFASHKVDVLKLDEL
VRQYTHQGTPRVTAEPVLLNGMFKGFIDLTFEHAGRYYVADYKSNWLGVDDAAYTEQAME
QSILDNRYDLQYVLYLLALHRQLRARLADYDYDRHVGGALYLFLRGTGSASRGVFFTRPP
RELIERLDRLFQGKPEQPRAEPAWEQGVLL
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgagccgacaggcacctctggccctggcatttccgctgcgcggcagccagttgatcgaa
gccagcgccggtacgggcaagaccttcaccatctcggcgctgtacctgcggctggtgttg
gggcatggcggcgaggaggccgggttcgggcgtgagttgctgccgccacagatcctggtg
gtgactttcaccgatgcggccaccaaggagctgcgcgaacggatccgtacccgcctggct
gaagccgcacgcttcttccgggacgaaaccgccgcccccgataccttgattgccgagctg
cgcgagcaattcgcggtcgagcaatggccgggttgcgccagccgcctggatatcgccgcg
caatggatggacgaggctgcggtctcgactatccacagttggtgccagcgcatgctgcgc
gagcacgccttcgacagcggcagcctgtttacccagaccctggaaaccgatcacagcgac
ttgctgggcgaagtgctgcgtgactactggcggctgttttgctacccgatgcagggcgat
gccttgaactgggtacgggccaactggggcggccccgcagccttgttgcccagggtgcgc
gcgctgttcggcagtgaacctgaggcgcgcgaggagcgcacgccggcacaactgatcgag
gcctgcctgcaggagcgccgctcggcgctggtgcaactcaaggcaccctggcggcaatgg
gcggcagagctgcgggagatctgcctgcagggcgtcgcgagcaaggcggtcgatggccgc
aagatgcaggcccgctactttgaaccctggttcgagaagatcgaggcctgggccgcggac
gacagcatcgagcagctggatatcggcaccggcttcagccgcctgacgcccgatggcatg
gccgaggcctggaagggcgaggcaccgagtcatcctgcgctggaggcgatgtcgagcctg
aaagccgcactcgatgccttgcccagtccggatgccgcagtgttgcaacatgctgcgcgc
tgggtcggtgcgcgcttcgaggaggagaagcgccgacgcgccgagatgggcttcgacgac
atgctgctgcgcctcgatgccgccttgcaggccgaaggcggcgagcgcctggcgacgctg
attcgcgagcagttcccggtggctctgatcgatgaattccaggataccgacccggtgcag
taccggatcttcgagagcatctaccgcatcgaggacaacagccccgaaaccggcctgttc
ctgatcggcgaccccaagcaggcgatctatgccttccgtggcgccgatatctatacctac
ctgcgcgcgcgccaggccaccagtggccggctgcataccctgggcaccaacttccgctcc
agccatgccatggtcaaggcggtgaaccatgtgttcgaacgggccgagtgccgcgagcaa
ggtcgtggcgcgttcctgttccgggagcccggcggagagaaccccgtgccgttcctgtcg
gtggcctcgcaggggcgcaaggagcagttgcaggccgacgggcagggcgtgccggcattg
aacatctggcacttgcccgccgaacaacccatttccggagcgctgtaccgccagcaattg
gccgcgacctgcgccagcgagatcgtcgccttgctcaatggcgggcagcaggggcgtgtc
ggattcatgcgcgacggccagcctttcaaaggggtgttgccggcggatatcgcgattctg
gtgcgcgacggcaaggaggcccaggcggtgcgtggcgaactggccgcgcgtggagttcgc
agcgtgtacctgtcggacaaggactcggtattcgccgcccaggaagcccatgacctgctg
gcctggctcaaggcctgcgccgagccggacgtcgaacgcccgctgcgcgcggccctggcc
tccattaccttgggcctgccgctggtcgagctggagcgcctgaaccaggacgaactggcc
tgggagggacgggtcatgcagtttcgcgggtatcgcctgatctggcggacccagggcgtg
ctgccgatgctgcgacgcttgttgcatgacttccagctgccccaggcgttgatcgcccgc
agcgatggcgaacgggtcctgaccaacttgctgcacctgtgcgaactgctgcagcaagcg
gccggcgaactggacggcgagcaggcgctgatccgtcatctggccgagcatctggcctct
tccgcccaggcgagcgaagaacagatcctgcgtctggaaagcgacgaacaactggtcaag
gtggtgaccatccacaagtccaagggcctggagtacccgctggtattcctgcccttcatc
tgttcggccaaaccggtggacggcagccgcctgccgctgcattaccacgatgagtcgggc
aaggcgcagatgacgctgcggccaaccccggagctgatcgcccaggccgacgacgagcgc
ctggccgaagacctgcgtctgctctatgtggccctgacccgtgcccagcatgcgtgctgg
ctgggtgtcgcggatctcaagcgcggcaaccacagcagctcggtgctgcacctgtcggcc
ctgggttacctgctcggcggcggcgcgcggttgagcgagtccgcgggcttgctccgctgg
ctgcaagacctgcaacaagactgcgcggccgtgagtgtcagcgagttgccgaacccttcc
ggcatgcgcttccatccgccacgcaacgacgccaccctgctggctccgctggagcccaag
cggcgggccgcggaaaactggtggatcgcctcctacagtgccttgcgcatcagcgacacc
ctgggtgccggcaacaccgaggcgccggagagcccccaggcgcaaaagctctttgacgac
gagcgtctcgatcccgatgcgccccgcgaggtgatggccagcggtgcggatatccatcgt
tttccccgcgggccgaatccgggcaccttcctccacggcctgctggaatgggccggtgac
gaaggcttcggcgccgaccccgcggccatcgaggacgccatcgctcgccgctgcaaccgc
cgaggctggcaaggctggattcgtaccctgagcgactggttagggcacctgttgcgactg
cccctgcctgccggagcggggcagccgcccgtggtgcttgccgagttggcccgctaccgg
gtggagatggagttctggttcgccagccacaaggtcgatgtgctcaagctcgacgagctg
gtgcgccagtacacgcaccagggcacgccccgggtgacggccgagccggtgctgctcaac
ggtatgttcaaggggttcatcgacctgaccttcgagcacgccgggcgctattacgtggcc
gattacaaatccaactggctgggcgtggacgacgccgcctataccgagcaggccatggaa
caatcgattctcgataaccgctacgacctgcaatacgtgctgtacctgctggccttgcac
cgtcagctgcgggcgcgcctggcggattacgattacgaccgccacgtggggggcgccctg
tatctgttcctgcggggcacgggatcggccagtcgcggggtgtttttcacccggccgccc
cgtgagctgatcgagcgcctggaccgcttgttccagggcaagcccgagcagcctcgcgcc
gagccggcctgggaacagggagtattgctgtga
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