Pseudomonas sp. MRSN12121: TO66_04290
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Entry
TO66_04290 CDS
T03702
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
psem
Pseudomonas sp. MRSN12121
Pathway
psem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TO66_04290
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psem03019
]
TO66_04290
03016 Transfer RNA biogenesis [BR:
psem03016
]
TO66_04290
Enzymes [BR:
psem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TO66_04290
Messenger RNA biogenesis [BR:
psem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TO66_04290
Transfer RNA biogenesis [BR:
psem03016
]
Prokaryotic type
tRNA degradation factors
TO66_04290
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
AJO76540
LinkDB
All DBs
Position
958824..960929
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AA seq
701 aa
AA seq
DB search
MNPVIKKFQFGQSTVTLETGRIARQASGAVLVTVDDDVSVLVTVVGAKQADPGKGFFPLS
VHYQEKTYAAGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPEGFMNEVQVVCTVVST
SKKTDPDIAAMIGTSAALAISGIPFDGPIGAARVAFHESTGYLLNPTYEQLAASSLDMVV
AGTEEAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIKAVKELAAEAAKPTWDWAPAPEA
TALLGAIRAEFGEAISQAYTITVKADRYARLGELKDQVVAKLSGEEGQPSASDVKAAFGE
IEYRTVRENIVNGKPRIDGRDTRTVRPLNIEVGVLPKTHGSALFTRGETQALVVATLGTA
RDAQLLDTLEGEKKDPFMLHYNFPPFSVGECGRMGGAGRREIGHGRLARRSVQAMLPAAD
VFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVLT
DILGDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQ
IIGQSRTELSANAPTMIAMKIDTDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIFG
ETKEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV
EKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
gtgaacccggtaatcaagaaattccagttcggtcagtcgaccgttaccctcgagactggc
cgtatcgcccgtcaggcctccggcgcagtattggtcaccgttgacgacgacgtcagcgta
ttggtgaccgtggttggcgccaagcaagccgatccaggcaagggtttcttccctctgtct
gttcactaccaggaaaagacttacgctgccggtaagatccctggcggtttcttcaagcgc
gaaggccgtccttccgagaaagaaaccctgacctcgcgtctgatcgaccgtccgatccgc
cctctgttcccagaaggcttcatgaacgaagtgcaggttgtctgcaccgtggtttccacc
agcaagaagaccgatccggacatcgctgcgatgatcggtacctcggctgcgctggccatc
tccggcattcctttcgacggtccgatcggcgctgcccgcgttgctttccacgaaagcacc
ggctacctgctgaacccgacctacgagcaactggctgcttcgagcctggacatggtcgtg
gccggtaccgaagaagcggtactgatggttgagtcggaagccaaagagctgaccgaagac
cagatgctgggcgccgtgctgtttgcccacgacgaattccaggccgttatcaaggcggtc
aaagagctggctgccgaagcggccaagccgacctgggactgggctcctgctccagaagcc
accgctctgctgggcgcgatccgcgccgagttcggcgaagcgatctcccaggcttacacc
atcaccgtcaaggccgaccgttatgcgcgcctgggcgagctgaaagaccaggtcgttgcc
aagctgtccggtgaagaaggccagccttctgccagcgacgtcaaagccgctttcggcgaa
atcgaataccgcaccgttcgcgaaaacatcgtcaacggcaagccgcgtatcgacggccgt
gacacccgcaccgtgcgtccgctgaacatcgaagtcggtgttctgccgaagacccacggt
tcggccctgttcacccgtggcgaaacccaggccctggttgtcgcgaccctgggtaccgcc
cgtgacgcacagctgctggacaccctggaaggcgagaaaaaagacccgttcatgctgcac
tacaacttccctccgttctcggtgggcgagtgtggtcgcatgggtggcgccggtcgtcgt
gaaatcggtcatggtcgcctggctcgtcgttcggtccaggccatgctgccagccgccgac
gtgttcccgtacaccatccgcgtggtatcggaaatcaccgagtccaacggttccagctcc
atggcttccgtgtgtggcgcttccctggcgctgatggacgctggcgtgccgatgaaggcg
ccggttgccggtatcgccatgggcctggtgaaagaaggcgagaagttcgccgtcctgacc
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggtagccggtaccgcc
aagggcgtgaccgcgctgcagatggacatcaagatcaagggcatcaccgaagaaatcatg
gagatcgccctgggccaggccctggaagctcgcctgaacatcctcggccagatgaaccag
atcatcggccagtcgcgtaccgaactgtcggccaacgctccgaccatgatcgcgatgaag
atcgacaccgacaaaatccgtgatgtcatcggtaaaggcggcgcgaccatccgtgcgatc
tgcgaagagaccaaggcttcgatcgatatcgaagacgacggctcgatcaagatcttcggc
gaaaccaaggaagctgcggaagccgcgcgtcagcgcgttctgggcatcaccgcggaagcc
gagatcggcaagatctacgtcggcaaggtcgagcgcatcgtcgacttcggtgcgttcgtc
aacatcctgcctggcaaggacggcctggtgcacatctccatgctgagcgatgctcgcgtc
gagaaagtcaccgacatcctgaaagaaggccaggaagtggaagtgctggtactggacgtg
gacaaccgcggtcgtatcaagctgtccatcaaggacgtggcagccgccaaggcttcgggc
gtttaa
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