Pseudomonas sp. MRSN12121: TO66_05265
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Entry
TO66_05265 CDS
T03702
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
psem
Pseudomonas sp. MRSN12121
Pathway
psem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TO66_05265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psem03019
]
TO66_05265
Enzymes [BR:
psem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TO66_05265
Messenger RNA biogenesis [BR:
psem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TO66_05265
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
Motif
Other DBs
NCBI-ProteinID:
AJO76724
UniProt:
A0A0C5DX85
LinkDB
All DBs
Position
complement(1181908..1183386)
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AA seq
492 aa
AA seq
DB search
MTVLKALKKIFGKSEAEQLAPGPSPSSSSPSSRTDGHQPERTAPATAPRKEPTPPAAPAT
QSAPRGDKPKAEQPRRPRAPKPPVSTWKLEDFVVDPQEGKTRFHDFKLAPELMHAIHDLG
FPYCTPIQAQVLGFTLAGKDAIGRAQTGTGKTAAFLISIITQLLQTPPPKERYMGEPRAL
IIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARHCDILVATPGRLLD
FNQRGDVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPPKSERQTLLFSATFTDDVMN
LAKQWTTDPAIVEIEAENVANANVEQHIYAVASADKYKLLYNLVNDNGWERVMVFANRKD
EVRRIEERLVRDGVNAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISH
VINFTLPEVPDDYVHRIGRTGRAGADGVSISFAGEDDSYQLPSIEALLGRKISCEMPPTE
LLRPVERKRPKA
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgaccgtgctcaaagcactcaagaaaatcttcggtaaaagcgaggctgagcagctcgcg
ccaggccccagcccttcttcctccagtcccagcagccgcaccgacggccatcagccggaa
cggaccgcgcctgccaccgccccccggaaagaaccgacgccccctgccgccccggccacg
cagagcgccccgcgcggcgacaagcccaaggccgagcagccgcgccgcccgcgcgcgccg
aagccgccggtgagcacctggaaactggaagatttcgtcgtcgacccccaggaaggcaag
acccgcttccatgacttcaagctcgccccggagctgatgcacgcgatccacgacctgggt
ttcccctactgcacgccgatccaggcgcaggtcctgggcttcaccctggccggcaaagac
gccatcggccgcgcccagaccggtaccggcaagaccgccgcgtttctgatctcgatcatc
acccagctgctgcagaccccgccgccgaaagagcgctacatgggcgagccgcgggcgctg
atcattgccccgacccgcgagctggtggtgcagatcgccaaggacgccgcggcgctgacc
aaatacaccggcctcaacgtgatgacctttgtcggcggcatggacttcgacaagcagctc
aagcagctcgaagcccgccattgcgacatcctggtcgccacgccaggccgcctgctggac
ttcaaccagcgcggcgacgtgcacctggacatggtcgaagtgatggtgctggacgaagcc
gaccgcatgctcgacatgggtttcatcccacaagtacgccagatcattcgccagaccccg
ccgaaaagcgaacgccagacccttctgttctccgccaccttcaccgacgacgtgatgaac
ctggccaagcagtggaccaccgacccggccatcgtcgagatcgaagccgagaacgtggcc
aacgccaacgtcgaacagcacatctatgcggtggccagcgccgacaagtacaagctgctg
tacaacctggtcaacgacaacggctgggaacgggtgatggtcttcgccaaccgcaaggat
gaggtgcggcgcatcgaggaacgcctggtgcgcgatggcgtgaacgccgcccagctgtcc
ggcgacgtgcctcagcacaagcgcatcaagaccctggaaggtttccgcgaaggcaagatt
cgcgtgctggtggccaccgatgtcgccggtcgcggcatccacatcgacggcatcagccac
gtgatcaacttcaccctgccggaagtgccggacgactacgtgcaccggatcggtcgtacc
ggccgggcgggcgccgatggcgtgtccatcagcttcgccggcgaggatgactcctatcag
ctgccgtcgatcgaagcgctgctggggcgcaagatcagttgcgagatgccgccgaccgag
ctgttgcgccccgtggagcgcaagcgcccgaaggcctga
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