Pseudomonas sp. MRSN12121: TO66_07590
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Entry
TO66_07590 CDS
T03702
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
psem
Pseudomonas sp. MRSN12121
Brite
KEGG Orthology (KO) [BR:
psem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psem03019
]
TO66_07590
Enzymes [BR:
psem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TO66_07590
Messenger RNA biogenesis [BR:
psem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TO66_07590
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_19
AAA_22
nSTAND3
T2SSE
AAA_25
NACHT
ABC_tran
ResIII
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AJO77169
UniProt:
A0A0C5DYG1
LinkDB
All DBs
Position
1669791..1673702
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AA seq
1303 aa
AA seq
DB search
MTDEAPAIDQLLKNLDQAMFADRHRLRRQLLELRKKPDEAKLAQWLERMQASCAQVVSRR
ASVPSIRYDDSLPIAAKRDEIKAALHKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELGTPLGALVGYQVRFEDQSDANTLIKLMTDGILLAETQND
RFLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAHERSERRSPGDV
LVFLPGEREIRDAAEMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYS
EEDFNGRPEFTDPEILRTNLAAVILQMLHLRLGEITAFPFIEPPDGKAISDGFNLLQELS
AVDRNGQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDADSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDAH
RQLSLICRDLQLSLNKEPADYPKLHKAVLVGLLSQIGQKTEDGDYLGARQRRFWVHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIEPDWIEPLAGHLIKKNHFEPHWEKKRGQVVAY
EQITLFGLIVVGRRPVHYGQVDPVVSRELFIREGLVRGEIQSKAKCLSANTRLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRINSQKDPQLLIMREEDVLARE
ASEVTALQYPDTLHIGDLELALSYHFEPNHPRDGVTLRVPAPLLPALPAERLEWLVPGLV
EAKCIALVRNLPKALRKNFVPVPDFVKAALARIEFAQGSLPQALGRELLRMTGARVSDEA
WAESAQQVEGHLRMNLEIVDAQGKFLGEGRDLAELTARFAEASQAALAVPQTAKSQQPVE
AKVFAPVAQKTQQKIAGLSMTVYPALVEEAGTVKEGRFSTPAEAEFQHRRALQRLLLQQL
AEPAKFLRNKLPGLTELGLLYRELGRVDALVEDILLASLDSCVLEGEDSLPRDGAGLASL
AERKRGNWTEHAERLARLTLDILKLWHGLQKRFKGKIDLAQAVALNDIKSQLGHLVYPGF
VRETPAQWLKELPRYLKAVELRFEKLGSQVQKDRVWSTELAGLWNQYQARTSKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKAPISDKRLNKQWSQVEA
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgaagcgcctgcaatcgaccaactgctgaaaaacctcgaccaagccatgttc
gccgaccgccaccggttgcggcggcagttgctggaactgcgcaagaagcccgacgaggcc
aagctggcgcagtggctcgagcgcatgcaggcgtcctgcgcccaggtggtgtcgcggcgg
gccagcgtgccgtcgatccgctacgacgacagcctgccgatcgccgccaagcgcgacgag
atcaaggccgcgctgcacaagcaccaggtgctgatcatcgccggcgagaccggctcgggc
aaaaccacccagctgccgaagatctgcctggagatcggtcgcggccagcacggcctgatc
ggccatacccagccccggcggatcgccgcgcgcagcgtggccagccgggtcgccgaagag
ctgggcacgcccctgggcgcgctggtggggtatcaggtgcgtttcgaggaccagagcgac
gccaataccctgatcaagctgatgaccgacggcatcctgctggcggaaacccagaacgac
cggttcctggaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctgaac
atcgatttcctcctcggctacctgaagaccctgttgccgcggcgcccggacctgaaagtc
atcatcacctcggcgaccatcgacctggagcgtttctccaagcatttcgacgacgcaccg
atcgtcgaagtctccggtcgcaccttcccggtggaaacctggtatcgcccgctgaccctg
gagcaggacgaggagggcaaccgggtcgaggacgacctgacggtggatcaggcgatcctc
gccaccctcgacgaaattgccgcccacgagcgcagcgaacgccgcagcccgggcgatgtg
ctggtgttcctgccgggcgagcgggagatccgcgatgccgccgagatgctgcgcaaggcc
cagctcaagcacaccgaaatcctgccgctgtatgcgcgcctgtcgccggccgagcagcag
cggatcttccagtcccatccggggcgcagggtggtgctggcgaccaacgtcgccgagacc
tcgctgaccgtgccgggcatccgctacgtgatcgacagcggcaccgcgcgcatcagccgc
tacagctaccgggccaaggtccagcgcctgcccatcgaggcgatttcccaggccagcgcc
aaccagcgcaagggccgctgcggccgggtcgagccgggcatctgcgtgcgcctgtacagc
gaagaggatttcaacggccggccggaattcaccgacccggagatcctgcgcaccaacctg
gcggcggtgatcctgcagatgctgcacctgcgccttggcgaaatcaccgcgtttcccttt
atcgaaccgccggacggcaaggccatcagcgacggtttcaacctgctgcaagaactttcg
gcggtggatcgcaacggccagctgacgccgctgggccgccagctggcgcgcctgccggtg
gacccgcgcatgggccgcatgctgctggaagcggcgaaactcggcagcctgcaggaagtg
ctgatcgtcgccagcgccatgtcgatccaggacccgcgcgaacgtccgccggagcgccag
caagcggccgaccaggcccacgcgcaatggaaagacgcggactcggatttcgccgggctg
gtcaacctgtggcgcggtttcgaagagcagcgccaggcgctgaccgccagcccgctgcgc
aactggtgccgcaagaatttcctgaattacctgcgcctgcgcgagtggcgcgatgcccac
cgccagttgagcctgatctgccgcgacctgcagctgagcctgaacaaggagccggccgat
tacccgaaactgcacaaggcggtgctggtcggcctgctgagccagatcggccagaagacc
gaggacggcgactacctcggcgcgcgccagcggcgtttctgggtgcatccgtcgtccggg
ctgggcaagaagcggccgcagtggctgatgaccgccgagctggtggaaaccaccaagctc
tatgcgcgcatggtggccaagatcgagccggactggatcgagccgctggccgggcacctg
atcaagaagaaccacttcgaaccccactgggagaagaagcgcggacaggtggtggcctac
gagcagatcaccctgttcggcctgatcgtggttggtcgccgcccggtgcattacggccag
gtggacccggtggtgtcgcgcgagctgtttatccgcgaaggcctggtgcgcggtgaaatc
cagtcgaaggccaagtgcctgagcgccaacacgcggctgctggagcagctcgacgaactg
gaagccaaggcccggcgccgcgacatcctcgccgacgaggaaaccctgttcgccttctac
gacgcgcgcctgccggcggagattcaccagaccgcgaccttcgacagctggtaccggatc
aacagccagaaagacccgcaactgctgatcatgcgcgaggaagacgtgctggcccgcgaa
gccagcgaagtcaccgccctgcaatacccggacaccctgcacatcggcgatctggagctg
gccctgagttatcacttcgagcccaaccatccgcgcgacggcgtcaccctgcgggtgccg
gcgccgctgctgccggccttgccagccgaacgcctggagtggctggtgccggggctggtg
gaagccaagtgcatcgccctggtgcgtaacctgcccaaggccctgcgcaagaacttcgtg
ccggtgccggacttcgtcaaggcggccctggcgcgtatcgagttcgcccagggctcgctg
ccccaggccctgggccgcgagctgttgcgtatgaccggcgcgcgggtcagcgacgaggcc
tgggccgagtcggcgcaacaggtggaaggccacctgcggatgaatctggaaatcgtcgac
gcccagggcaagttcctcggtgaaggccgcgacctggccgagctgaccgcgcgcttcgcc
gaagccagccaggccgccctggcggtgccgcaaaccgcgaaaagccagcagccggtggaa
gccaaggtgtttgctccggtggcgcagaagacccagcagaagatcgccgggctgtcgatg
acggtgtatccggccttggtggaagaagccgggacggtcaaggaagggcgtttctcgacc
ccggccgaggccgagttccagcatcgccgggccttgcagcgcctgctgctgcaacagctg
gccgagccggccaagttcctgcgcaacaagctgccggggctgaccgagctgggcctgctg
taccgcgagctggggcgggtcgacgcgctggtcgaagacatcctgctggccagcctcgac
agctgcgtgctggaaggcgaagacagcctgccgcgggacggcgccggcctggcgtcgctg
gccgagcgcaagcggggcaactggaccgagcatgccgagcgcctggcgcgcctgaccctg
gacatcctcaagctctggcacggcctgcaaaagcgcttcaagggcaagatcgacctggcc
caggcggtggcgctgaacgacatcaagtcgcagctcggccacctggtgtacccgggcttc
gtccgcgagaccccggcgcaatggctcaaggaactgccgcgttacctcaaggccgtggaa
ctgcgcttcgagaaactcggcagccaggtgcagaaggaccgggtctggagtaccgaactg
gccgggctgtggaaccagtaccaggcgcggacgagcaagcacgcccaggaaggcaagcgc
gacccgcagctggagctgtaccgctggtggctggaggaataccgggtgtcgctgttcgcc
cagcaactgggcaccaaggcgccgatttccgataagcgcttgaacaagcagtggagccag
gtcgaggcctga
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