Pseudomonas sp. MRSN12121: TO66_08925
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Entry
TO66_08925 CDS
T03702
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
psem
Pseudomonas sp. MRSN12121
Pathway
psem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TO66_08925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psem03019
]
TO66_08925
03009 Ribosome biogenesis [BR:
psem03009
]
TO66_08925
Enzymes [BR:
psem01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TO66_08925
Messenger RNA biogenesis [BR:
psem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TO66_08925
Ribosome biogenesis [BR:
psem03009
]
Prokaryotic type
rRNA processing factors
TO66_08925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
AJO77416
UniProt:
A0A0C5E1E9
LinkDB
All DBs
Position
complement(1966415..1969657)
Genome browser
AA seq
1080 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALT
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
RECLEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSPEAANNQSSYEIAAAAAEAEEVQPAAATRTLVRQEAAVKTAPARANAPVPT
EAVAAPVAAPAAVAEPSLFKGLVKSLVSLFATKEEPAAPAVVEKPAAERPARNEERRNGR
QQSRNRNGRRDEERKPREERAPREERAPREERQPREVREAREEVQATAREERAPRPPREE
RQPRPPREERKPRGEREERVRELREPLDTAPAAAAEERPARQPREERQPRPPREERQPRA
EQAAAVAEEELLPNEEQLQEDGQENAEGDRPRRRSRGQRRRSNRRERQRDANGNVIEGSE
ENAEEPSSADLAAGLAVTAAVASSVISAPAEAQAHEQAERATAAVQETAPTTEPSVVEAP
VAEAPAVEATTVVEAPAAPAVELAQAREEHAAPEVIAEQPAAVEPAVEAPAQQPVAEPAP
QAPRAFEQAVEPAVVEAEAPAVEAPAPVTETVTEEVVAAQPVAVEPVVAAPVAAEPVVVA
PVEAPVAEAVAPVVEAAPASALTSNGRAPNDPREVRRRKREAERLQKEAELAAAAAAEAP
AEAVVAVEPAPAAVEVAPAAEPVIEQAAPAADETPRAVEEEVVEHHPKAQKEEHEPKPLA
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgccctggtagat
ggccaacgcctctacgacctggacatcgagtccggtgcccgcgagcagaagaaggccaac
atctataaaggccgcatcactcgcatcgaaccaagcctcgaggctgcctttgtcgatttc
ggctctgagcgccacggcttcctgcccctcaaagaaatctcccgcgaatacttcaagaaa
gcccccgaaggccgcgtcaatatcaaggacgtcctgagcgaaggccaggaagtcatcgtc
caggtcgagaaagaagaacgtggcaacaagggcgcagccctgaccaccttcatcagcctg
gccggtcgttacctggtgctgatgccgaacaacccgcgtgccggtggtatttctcgccgc
atcgaaggcgaagagcgcaacgaactgcgcgaagccctgaacggcctggtagcccctgcc
gacatgggcctgatcgtgcgtactgcgggcctgggccgcagcagcgaagaaatgcagtgg
gacctcgactacctgctgcaactctggaccgccatcaaggaggcatcgctggatcgcgcc
gcgcctttcctgatctaccaggaaagcaacgtaatcatccgcgccatccgcgattacctg
cgccaggacatcggcgaagtgttgatcgacagcgtcgaagcccaggacgaagccctgacc
ttcattcgccaggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtg
ccgctgttcaaccgtttccagatcgaaagccagatcgaaaccgctttccagcgcgtcgtc
gaactgccttccggcggctccatcgtcatcgatccgaccgaagccctggtgtccatcgac
atcaactcggcccgcgccaccaaaggcagcgacatcgaagagaccgccctgcagaccaac
ctcgaggcagcggaagaaatcgctcgccagctgcgcctgcgcgacatcggcggcctgatc
gtcatcgacttcatcgacatgacccccgccaagaaccagcgcgccgtggaagaaaaagtc
cgcgaatgcctggaagccgaccgcgctcgcgtccaggtcggtcgcatctcgcgcttcggc
ctgctggaaatgtcccgtcagcgcctgcgtccatcgctcggcgaaagcagcggcatcgtc
tgcccgcgctgcaacggcaccggcatcatccgcgacgtcgaatcgctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcccaagtg
ccgattccggtcgccgctttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgcgctcgtatcgtcatcctgccgaacgaccatctcgaaacgccgcacttc
gaagtgcagcgcctgcgcgatgacagcccggaagccgccaacaaccagtccagctacgaa
atcgccgctgccgccgccgaggccgaagaagtccagccagccgccgcgacccgtaccctg
gttcgccaggaagcggcggtcaagactgccccggcccgcgccaacgccccggttccaacc
gaagccgtcgcagcgcctgtcgccgctccagccgccgttgccgagccaagcctgttcaag
ggcctggtgaaatcgctggtcagcctgttcgccaccaaggaagagccagccgctccagcc
gtagtggaaaaaccggccgccgagcgccctgcccgtaacgaggaacgccgcaacggtcgc
cagcagagccgcaaccgtaacggtcgccgtgacgaagagcgcaagccgcgcgaagaacgt
gccccacgtgaagagcgcgcgccacgcgaagagcgtcagccacgtgaagttcgcgaagcc
cgcgaggaagtccaggccaccgctcgcgaagagcgcgcaccacgtccgccgcgcgaagag
cgtcagccgcgtccaccacgtgaagagcgcaagccacgtggcgagcgtgaagaacgcgtg
cgcgaactgcgcgaaccgctggataccgctccagccgctgccgctgaagagcgcccggct
cgtcagccacgggaagagcgtcagccgcgtccaccgcgcgaagagcgtcaaccacgcgcc
gaacaggccgctgccgtagctgaagaagagctgctgccgaatgaagagcaactgcaggaa
gacggccaggagaacgccgagggcgatcgtccacgccgccgctcccgtggccagcgtcgt
cgcagcaaccgtcgcgagcgtcagcgcgacgccaacggcaatgtgatcgaaggctcggaa
gaaaacgccgaagaaccaagcagcgccgatctggccgccggcctggcggtgactgccgcc
gttgccagcagcgtgatcagcgcccctgccgaagcccaggctcacgagcaggccgagcgt
gccaccgccgctgtccaggaaaccgctccgaccaccgaaccttcggtagtcgaagcacct
gtagccgaagcaccggcagtcgaagccacgacagtggtagaagctcctgcggcacccgct
gttgaactggctcaggctcgcgaagaacacgcggcgccagaagtgattgccgagcaaccc
gccgccgtcgagccagcagtcgaggcgccagcccaacagccggtcgcagagcccgccccg
caagcgcctcgcgccttcgagcaagcggtcgagccagcggtggttgaagccgaagcaccc
gctgtcgaagcgcctgctcccgtcacggaaaccgtgaccgaagaagtcgtggcggcacaa
cctgtcgccgtcgagccggtagttgccgcccctgtggctgccgagccggtggttgtcgct
ccggttgaagcacctgtcgccgaagcggtcgcaccggttgtcgaggccgccccggccagc
gccctgaccagcaatggtcgagcgccgaacgacccgcgcgaagtgcgccgtcgcaagcgc
gaagccgagcgtctgcagaaggaagccgaactggccgccgctgctgccgcagaagctccg
gctgaagccgtggtggccgtcgaacctgcgccagccgctgtcgaggtggcccctgccgcc
gagccggtgatcgagcaagccgctcctgccgctgacgaaaccccgcgtgccgtcgaagaa
gaagtggtagagcatcaccccaaggcccagaaagaagagcatgagcctaaacccctcgcc
tga
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