KEGG   Pseudomonas sp. MRSN12121: TO66_23930
Entry
TO66_23930        CDS       T03702                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
psem  Pseudomonas sp. MRSN12121
Pathway
psem02020  Two-component system
Brite
KEGG Orthology (KO) [BR:psem00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    TO66_23930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:psem03021]
    TO66_23930
Transcription machinery [BR:psem03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     TO66_23930
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 HTH_23 Sigma70_r4 Sigma70_ECF GerE HTH_31 HTH_24 DUF7123 DUF2774 HTH_3 VMAP-M0 HTH_28 HTH_Tnp_4 HTH_10 DUF6362 HTH_11 Xre-like-HTH Terminase_5 HTH_5 HTH_40
Other DBs
NCBI-ProteinID: AJO80157
LinkDB
Position
complement(5285159..5285680)
AA seq 173 aa
MSGADTTHSDYVGGLFRSHYDWLCGRLRSHLHASSEAGASAEDIAADTFVQLLSRPEGAP
IRQPRALLTTISQRLMYQLWRRRDLERAYLDALQHEADSVPPSPQDLAQMLEALEAIDRL
LDGLPAKVKATFLLSQVNGLTYPQIAEQLGISQRSVSDYMTRVAQRCLRLDLD
NT seq 522 nt   +upstreamnt  +downstreamnt
atgtccggcgccgacacgactcacagcgactatgtgggcggcttgttccgcagtcattac
gactggctgtgcggccgcctgcgcagtcacctgcacgcctcttcggaggctggcgccagc
gccgaagacatcgccgccgacaccttcgtccagttgctgagcaggcccgagggggcgccg
atccgccagccgcgggccttgctgacgaccatttcgcaacgcctgatgtaccagctgtgg
cgccggcgcgacctggagcgagcctacctcgatgccttgcagcacgaggccgacagcgtg
ccgccgtcgcctcaggacctggcgcagatgctcgaggcgctggaagccatcgaccgcctg
ctcgacggcctgccggccaaggtcaaggcgaccttcctgctgtcccaggtcaacggcctg
acctacccgcagatcgccgagcaactggggatctcgcaacgttcggtcagcgactacatg
acccgggtcgcccagcgttgcctgcgcctggacctggactga

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