KEGG   Pseudomonas sp. MRSN12121: TO66_28005
Entry
TO66_28005        CDS       T03702                                 
Name
(GenBank) excinuclease ABC subunit A
  KO
K03701  excinuclease ABC subunit A
Organism
psem  Pseudomonas sp. MRSN12121
Pathway
psem03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:psem00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    TO66_28005
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:psem03400]
    TO66_28005
DNA repair and recombination proteins [BR:psem03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TO66_28005
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      TO66_28005
SSDB
Motif
Pfam: UvrA_inter UvrA_DNA-bind ABC_tran SMC_N nSTAND1 AAA_29 AAA_16 AAA_23 BCA_ABC_TP_C AAA_21 RsgA_GTPase DnaJ_CXXCXGXG Viral_helicase1 nSTAND3 cobW AAA_25 ExoX-like_C
Other DBs
NCBI-ProteinID: AJO80926
LinkDB
Position
6154659..6157493
AA seq 944 aa
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSMMEKPDVDTIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRC
PDHDIPLEAQTVSQMVDLVLAQPEGSKLMLLAPVIRERKGEHLSVFEELRAQGFVRARVN
GKLYELDELPKLDKQKKHSIDVVVDRFKVRADLQQRLAESFETALKLADGIALVAPMDDE
PGEEMIFSARFACPICGHAISELEPKLFSFNNPAGACPTCDGLGVKQFFDIKRLVNGELT
LAEGAIRGWDRRNVYYFQMLGSLASHYGFSLEVPFNQLPADQQKVILNGSGTQNVDFKYL
NDRGDIVKRSHPFEGIVPNLERRYRETESATVREELAKFLSTQPCPDCRGTRLRREARHV
WVGEKTLPAVTSLPIGDATDYFGTLSLTGRRGEIADKILKEIRERLQFLVNVGLDYLTLD
RSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLGTLKHLRDIGNTV
IVVEHDEDAIRLADYVVDIGPGAGVHGGQIVAEGTPDEVMSHPDSLTGKYLSGRVKIAVP
AKRTPRNKKLSLSLKGARGNNLRNVDLEIPIGLLTCVTGVSGSGKSTLINNTLFPLSATA
LNGATTLEAAAHDSINGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPES
RSRGYGPGRFSFNVKGGRCEACQGDGLIKVEMHFLPDIYVPCDVCKSKRYNRETLEIKYK
GKSIHEVLEMTIEEAREFFDAVPALARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLS
RELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDHGNTVVVIEHNLDVIKTADWL
VDLGPEGGSKGGQIIAVGTPEQLAEMPQSHTGYYLKPLLTRDRD
NT seq 2835 nt   +upstreamnt  +downstreamnt
ttggacaagatcctgattcgtggggcccggacccacaacctgaagaacatcgacctgacc
ctgccacgggacaaactgatcgtcatcaccggcctgtccgggtcgggcaaatcatcgctg
gccttcgacacgctgtacgccgaaggccagcgacgctatgtcgagtccctgtcggcgtac
gcccgccagttcctctcaatgatggaaaagcccgacgtcgacaccatcgaaggcttgtcg
ccggcgatctccatcgagcagaaatccacctcgcacaacccgcgctccaccgtgggtacc
atcaccgagatctacgactacctgcgcctgctctacgcgcgggtcggtacgccgcgctgc
ccggatcacgacattccgctggaagcccagaccgtcagccagatggtcgacctggtgctg
gcccagccggaaggcagcaagttgatgctgctggcgccggtgattcgcgaacgcaagggc
gaacacctgtcggtcttcgaggaactgcgcgcccagggcttcgtccgggcccgggtcaac
ggcaagctgtatgagctggacgagctgccgaagctggataaacagaagaagcattcgatc
gatgtggtggtcgaccgcttcaaggtgcgtgccgacctgcagcagcgcctggcggaatcc
ttcgagaccgccctgaagctggccgacgggattgccctggtggcgccgatggacgatgag
cccggcgaggaaatgatcttctccgcgcgcttcgcctgcccgatctgcggccatgccatc
agcgagctggaacccaagctgttctccttcaacaacccggccggcgcctgcccgacctgc
gacggcctcggggtcaagcagttcttcgacatcaagcgcctggtcaacggcgagctgacc
ctggccgaaggggcgattcgcggctgggaccgacgcaatgtctattacttccagatgctc
ggctcgttggcctcgcactatggcttcagcctggaagtaccgttcaaccagctaccggcc
gaccagcagaaagtcatcctcaacggcagcggtacgcagaacgtcgacttcaagtacctc
aacgaccgtggcgacatcgtcaagcgctcccacccgttcgaaggcatagtgccgaacctg
gaacgccgctaccgggaaaccgagtcggccaccgtgcgcgaagaactggcgaagtttctc
agcacccagccatgcccggattgccgtggcacccgcctgcgccgcgaggcacgccatgtg
tgggtcggcgaaaagaccctgccggcggtcaccagcctgccgataggcgatgccaccgat
tacttcggcaccctgtcgctgaccgggcgccgcggcgagatcgccgacaagatcctcaag
gaaatccgcgagcgcctgcagttcctggtcaatgtcggcctggactacctgaccctggac
cgcagcgccgacaccctgtccggcggtgaagcccagcgcattcgcctggccagccagatc
ggcgccggcctggtgggggtgatgtacatcctcgacgagccgtccatcggcctgcaccaa
cgcgacaacgaccgcctgctgggcaccctgaaacatctgcgggacatcggcaacacggtg
atcgtggtcgaacacgacgaagatgccatccgcctagccgactatgtggtggacatcggc
ccgggcgctggcgtgcatggcggacagatcgttgcagaggggacgcccgacgaggtgatg
tcccacccggactcgctgaccggcaagtatctctccgggcgggtgaagatcgccgtgccg
gccaagcgtacgccgcgcaacaagaagctctcgttgtccctcaagggcgctcgcggcaac
aatctgcgcaatgtcgacctggagattccgatcggcctgctgacctgcgtgaccggtgtt
tccggctccgggaagtcgacgctgatcaacaacaccctgttccccctcagcgccacggcg
ctgaacggcgcgaccacactggaggccgcggcgcacgacagcatcaacggcctgcagcac
ctggacaaggtcgtggatatcgaccagagcccgatcggtcgcacgccgcgctccaacccg
gcgacctacaccgggctgttcaccccgatccgcgaactgtttgccggggttcccgaatcg
cgttcgcgtggctacggcccgggccgcttctccttcaacgtcaagggcggacgctgcgaa
gcctgccagggcgacggcctgatcaaggtggaaatgcacttcctgccggacatctacgtg
ccgtgcgatgtgtgcaagagcaagcgctacaaccgcgaaaccctcgagatcaaatacaag
ggcaagagcatccacgaggtcctggaaatgaccatcgaggaagcacgcgagttcttcgat
gccgtaccggcactggcgcgcaagctacagacgctgatggacgtggggctctcctacatc
aagctcgggcagtcggcgacgaccttgtccggtggtgaggcgcaacgggtcaagctgtcc
cgcgagctgtccaagcgcgataccggcaagactctctacatcctcgacgaaccgaccacc
ggcctgcatttcgccgatatccagcaactgctggacgtcctgcatcgcctgcgcgatcac
ggcaacaccgtggtggtgatcgagcacaacctggacgtgatcaagacggccgactggctg
gtggacctggggccggaaggtggctccaagggtggccagatcattgccgtggggacgccg
gagcaattggcggaaatgccacaatcccataccggctactacctcaagccgctgctgacc
cgcgaccgggattga

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