Pseudomonas sp. MRSN12121: TO66_29345
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Entry
TO66_29345 CDS
T03702
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
psem
Pseudomonas sp. MRSN12121
Pathway
psem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
psem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TO66_29345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
psem03019
]
TO66_29345
Enzymes [BR:
psem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TO66_29345
Messenger RNA biogenesis [BR:
psem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TO66_29345
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AJO81176
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All DBs
Position
6433701..6435557
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AA seq
618 aa
AA seq
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MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLIAPDEEKL
LKSIERMTKQKIPDGDLQGFDASAVEAEKPEVRERPDVRNPRNARGARGDGASNGGGRKD
KGKDKGKDKPAARGERPAREQKPREGTPASQQRPPKPSPDRAPDEFLDDDVDNFGNRADY
VSPYQNKNNQGRGRRPGAPGQGAANGNAPRGGGQGRTGGGQRNGGGASNSGSQPAKRSGG
SRNGAARDGQGRREESRNRRPGRDDQARQEPAVQNTRSNQPKIMHKESKADRFPTPEQLD
QLPSRPRGEKPALLTRNR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgccatcgaagccgccggc
tacacccagcctactcccgtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcacagacaggtactggtaaaaccggtggtttcgcccttccgatcctg
gagcggttgtttcccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtactggtcctgaccccgacccgcgaactggccgcgcaagtgcatgacagcttcaag
ctgtatgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggtccaggccatggcccgtggcgtcgacgtgctggtggcctgccccggccgcctg
cttgacctcgccggccagggcagcgtcgacttgtcccacgtggaaatcctcgtactggac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtgaagaaagtcctcgcccgc
ctgcccgccaagcgccagaacctgctgttttccgcgaccttctccaaggacatcacggac
ctggccggcaagctgctgcacaaccccgagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgagcaacgggtgttccgcctggccgccagccacaagcgtgcgctgctg
gcccacctgatcaccgccggcgcctgggaacaggtgctggtcttcacccggaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgaccgccgtcgcgatccac
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggccggtgaagtg
cggatcctggtcgccaccgatatcgccgcccgcggcctggacatcgaccagctgccgcac
gtggtcaacttcgagctgccgaacgtcgacgaagactacgtgcaccggatcggccgtacc
ggtcgcgccggtcgttcgggcgaggcgatctcgctgatcgccccggatgaagagaagctg
ctcaaaagcatcgagcgcatgaccaagcagaagatccccgacggtgatctgcaaggtttc
gacgccagcgccgtggaagccgagaaaccggaagtgcgcgagcgtccggatgtgcgtaac
ccgcgcaacgcccgtggcgcgcgcggcgacggcgcgagcaacggcggtggccgcaaagac
aagggcaaggacaagggcaaggacaaaccggccgcccgcggcgagcgtccggcccgcgaa
cagaaacctcgcgaaggcaccccggccagccagcagcgcccgccgaagccaagcccggac
cgcgcccccgacgagttcctggacgacgatgtggataacttcggcaatcgcgccgactac
gtcagcccgtaccagaacaagaacaaccagggccgcggccgccgtcctggcgcgccaggc
cagggcgcagccaacggcaatgcgccacgcggcggcggccagggtcgcaccggcggcggt
caacgcaacggtggcggcgccagcaactccggcagccagccggccaagcgcagcggtggc
tcgcgcaacggtgccgcgcgtgacggccagggacgtcgcgaagaatcgcgtaaccgtcgc
cccggtcgtgatgaccaggcgcgccaggagcccgcggtccagaacacccgcagcaaccag
ccgaagatcatgcacaaggagtcgaaagccgaccgcttcccgacacccgagcagctcgat
caactgccaagccgcccacgcggcgaaaaaccggccttgctgacccgcaatcgctga
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