Pseudomonas sp. MRSN12121: TO66_31280
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Entry
TO66_31280 CDS
T03702
Symbol
uvrD
Name
(GenBank) DNA-dependent helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
psem
Pseudomonas sp. MRSN12121
Pathway
psem03420
Nucleotide excision repair
psem03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
psem00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TO66_31280 (uvrD)
03430 Mismatch repair
TO66_31280 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
psem03400
]
TO66_31280 (uvrD)
Enzymes [BR:
psem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TO66_31280 (uvrD)
DNA repair and recombination proteins [BR:
psem03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TO66_31280 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
TO66_31280 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_11
PcrA_UvrD_tudor
AAA_22
RHH_1
HTH_TIMELESS
Motif
Other DBs
NCBI-ProteinID:
AJO81542
LinkDB
All DBs
Position
6850605..6852788
Genome browser
AA seq
727 aa
AA seq
DB search
MRDDLSLLLNSLNDAQRQAVAASLGRQLVLAGAGSGKTRVLVHRIAWLIQVENASPHSIL
SVTFTNKAAAEMRQRIEQLMGINPAGMWVGTFHGLAHRLLRAHWQEAGLSQTFQILDSDD
QQRLVKRVIRDLGLDEQRWPARQAQWFINGQKDEGLRPQHIQASGDLFLATMRGIYEAYE
AACQRAGVIDFSELLLRALDLWRDHPGLLAHYQKRFRHVLVDEFQDTNAVQYAWLRLLAK
GGDSLMVVGDDDQSIYGWRGAKIENIHQYSADFPDTEVIRLEQNYRSTAGILKAANALIA
NNTGRLGKELWTDGGEGEAINLYAAFNEHDEARYVVETIESALKTGLARSDIAILYRSNA
QSRVLEEALLRERIPYRIYGGQRFFERAEIKNAMAYLRLLEGRGNDAALERVINVPARGI
GEKTVEAIREHARHSHVSMWEAMRQLVVNKGLAGRAAGALNAFMELIEHLATITAEMPLH
LMTQVVIEQSGLIAYHEAEKGEKGQARVENLEELVSAARNFEHTEDEQELTPLAAFLGHA
SLEAGDTQADEHEDSIQLMTLHSAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRL
AYVGITRAMQNLVMTYAETRRLYGSETYNKVSRFVREVPKGLIQEVRLSNSVSRPFGGGQ
SQSTSSLFGGSEIPETGLSLGQAVRHSVFGDGVILNFEGAGAQARVQVNFSEGSKWLMLG
YAKLEAI
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgatgatctctcccttctgctgaactccctcaacgatgcccaacgccaggccgta
gccgcctccctgggtcgtcagttggtcctggccggtgctggctccggtaaaacccgagtg
ctggtgcaccgtatcgcctggttgatccaggtcgagaacgcctcgccccattcgatcctg
tcggtgaccttcaccaacaaggccgctgccgagatgcgccagcgcatcgagcagttgatg
ggcatcaacccggccggcatgtgggtcggcaccttccacggcctggcgcaccgcctgctg
cgggcgcactggcaagaggccggcctgagccagaccttccagatcctcgacagcgacgac
cagcaacgcctggtcaagcgggtaatccgcgacctcggcctggacgagcagcgctggccg
gcccgccaggcccagtggttcatcaacgggcagaaagacgaaggcctgcgcccgcagcac
atccaggccagcggcgacctgttcctggccaccatgcgcggcatctacgaagcctacgag
gccgcctgccagcgcgccggggtcatcgacttctccgagctgctgctgcgcgccctggac
ctgtggcgcgaccatcccggcctgctggcgcactaccagaagcgcttccgccatgtgctg
gtggacgagttccaggacaccaacgccgtgcagtacgcctggttgcgcctgctggccaag
ggcggcgacagcctgatggtggtgggcgacgacgaccagtcgatctacggctggcgtggg
gcgaagatcgagaacatccatcagtattccgcggacttccccgataccgaggtgatccgc
ctggagcagaactaccgctccaccgccggcatcctcaaggccgccaacgccctgatcgcc
aacaacaccgggcgcctgggtaaggagctgtggaccgatggcggcgagggcgaggcgatc
aacctgtacgccgccttcaacgaacacgacgaagcgcgctacgtggtggaaaccatcgaa
agcgccctgaagaccggcctggcccgcagcgatatcgccatcctgtaccgttccaacgcc
cagtcgcgggtgctggaagaggccctgctgcgcgagcgcatcccctatcgcatctacggc
ggccagcgcttcttcgagcgcgccgagatcaagaacgccatggcctacctgcgcctgctc
gaagggcgcggcaacgacgcggccctggagcgggtgatcaacgtgccggcccgcggcatc
ggcgaaaagaccgtcgaagcgattcgcgaacacgcgcgccacagccatgtgtcgatgtgg
gaagcgatgcgccagctggtggtcaacaaaggcctggccgggcgtgccgccggggccctg
aatgcgttcatggaactgatcgagcacctggcgaccatcaccgccgaaatgccgctgcac
ctgatgacccaggtcgtcatcgagcagtccggcctgatcgcctatcacgaggcggaaaaa
ggcgagaaaggccaggctcgggtagaaaacctcgaggaactggtcagcgccgcgcgcaac
ttcgaacacaccgaagacgagcaggaactgacgcccctggcggccttcctcggccatgcg
tcgctggaagccggcgacacccaggccgacgagcacgaagacagcatccagctgatgacc
ctgcacagcgccaagggcctggaattcccctacgtgttcctggtgggcatggaagaaggc
ctgttcccgcacaagatgagcctggaagaacccggccgccttgaggaagagcggcgcctg
gcgtatgtcggcattacccgggcgatgcagaacctggtgatgacctacgccgagacccga
cgcctgtacggcagcgaaacctacaacaaggtgtcgcgtttcgtacgggaagtcccgaaa
ggcctgatccaggaagtgcgcctgtccaatagcgtcagccgtccgttcggcggtggccag
tcgcagagcaccagcagcctgttcggcggcagcgagattccggaaaccggcctcagcctc
ggccaggccgtgcgccattcggttttcggcgacggggtgatcctcaatttcgagggcgct
ggcgcccaggcccgggtccaggtgaacttcagcgaaggcagcaagtggctgatgctcggc
tacgccaagctcgaagccatctga
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